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利用随机森林模型预测英国牲畜养殖场中蜱虫的当前和未来风险。

Predicting the current and future risk of ticks on livestock farms in Britain using random forest models.

机构信息

School of Biological Sciences, University of Bristol, Bristol, UK.

School of Biological Sciences, University of Bristol, Bristol, UK.

出版信息

Vet Parasitol. 2022 Nov;311:109806. doi: 10.1016/j.vetpar.2022.109806. Epub 2022 Sep 13.

Abstract

The most abundant tick species in northern Europe, Ixodes ricinus, transmits a range of pathogens that cause disease in livestock. As I. ricinus distribution is influenced by climate, tick-borne disease risk is expected to change in the future. The aims of this work were to build a spatial model to predict current and future risk of ticks on livestock farms across Britain. Variables relating both to tick hazard and livestock exposure were included, to capture a niche which may be missed by broader scale models. A random forest machine learning model was used due to its ability to cope with correlated variables and interactions. Data on tick presence and absence on sheep and cattle farms was obtained from a retrospective questionnaire survey of 926 farmers. The ROC of the final model was 0.80. The model outputs matched observed patterns of tick distribution, with areas of highest tick risk in southwest and northwest England, Wales, and west Scotland. Overall, the probability of tick presence on livestock farms was predicted to increase by 5-7 % across Britain under future climate scenarios. The predicted increase is greater at higher altitudes and latitudes, further increasing the risk of tick-borne disease on farms in these areas.

摘要

在北欧,最丰富的蜱种是蓖子硬蜱(Ixodes ricinus),它传播一系列病原体,导致家畜患病。由于蓖子硬蜱的分布受气候影响,预计未来蜱传疾病的风险将会发生变化。本研究的目的是建立一个空间模型,预测英国各地家畜养殖场的当前和未来蜱虫风险。模型中包含了与蜱虫危害和家畜暴露相关的变量,以捕捉更广泛规模模型可能错过的生态位。由于随机森林机器学习模型能够处理相关变量和相互作用,因此被用于该模型。从对 926 名农民的回顾性问卷调查中获得了有关绵羊和牛养殖场蜱虫存在和不存在的数据。最终模型的 ROC 为 0.80。模型输出与蜱虫分布的实际模式相匹配,英格兰西南部、西北部、威尔士和苏格兰西部是蜱虫风险最高的地区。总的来说,在未来的气候情景下,英国各地家畜养殖场蜱虫存在的概率预计将增加 5-7%。在高海拔和高纬度地区,预测的增加幅度更大,进一步增加了这些地区农场发生蜱传疾病的风险。

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