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基于 18S rRNA 基因的血孢子虫 PCR:一种用于快速准确检测动物中泰勒虫和巴贝斯虫属种的分子筛选方法。

18S rRNA Gene-Based Piroplasmid PCR: An Assay for Rapid and Precise Molecular Screening of Theileria and Babesia Species in Animals.

机构信息

Department of Veterinary Parasitology, College of Veterinary Science and Animal Husbandry, Kamdhenu University, Junagadh, Gujarat, 362001, India.

Referral Veterinary Diagnostic and Extension Centre, LUVAS, Uchani, Karnal, 132001, India.

出版信息

Acta Parasitol. 2022 Dec;67(4):1697-1707. doi: 10.1007/s11686-022-00625-2. Epub 2022 Sep 30.

Abstract

PURPOSE

The parasites of genera such as Babesia and Theileria are called piroplasmids due to the pear-shaped morphology of the multiplying parasite stages in the blood of the vertebrate host. Because of the enormous number of parasite species and the challenges of multiplex PCR, initial screening of samples using piroplasmid-specific PCR may be a more cost-effective and efficient technique to identify parasite species, especially during epidemiological studies. Accordingly, 18S rRNA PCR was standardized and optimized on common piroplasmids of different animals like cattle, buffaloes, sheep, goats, dogs, horses, and leopards.

METHODS

Bloods samples from 1250 animals were collected from different animals in Junagadh district of Gujarat, India. 18S rRNA PCR was standardized and optimized as a primary method for molecular screening of piroplasms in domestic and wild animals. The method was checked for its analytical sensitivity and specificity. Parasite species-specific PCR and sequencing was used to validate the test. Moreover, in-silico restriction enzyme (RE) analysis was also done to assess its applicability in PCR-RFLP.

RESULTS

Piroplasm infections were recorded in 63.3% of animals in Junagadh. The 18S rRNA PCR detected the piroplasmid DNA in as low as 39 picograms (pg) of whole blood genomic DNA isolated from microscopically Theileria positive blood samples and no reactivity was recorded from common but unrelated haemoparasites viz., Trypanosoma evansi, Hepatozoon spp., Anaplasma spp., and Ehrlichia canis was observed. The 18S rRNA PCR assay findings were confirmed by species-specific PCR and sequencing. Analysis of different sequences generated using 18S rRNA PCR revealed that the amplicon size of Babesia spp. is nearly 400 bp (393-408 bp) whereas Theileria spp. were more than 400 bp (418-424 bp). The percentage of sequence divergence among Babesia and Theileria spp. was 7.3-12.2% and 0.7-12.2%, respectively. In-silico restriction enzyme (RE) analysis reveals the presence of at least one site for a commercially available RE in 18S rRNA fragments of every parasite, which can differentiate it from its congeners.

CONCLUSIONS

The presented universal oligonucleotide-based PCR assay provides a highly sensitive, specific, cost-effective, and rapid diagnostic tool for the initial screening of piroplasmids infecting domestic and wild animals and is potentially helpful for large-scale epidemiological studies.

摘要

目的

由于脊椎动物宿主血液中增殖寄生虫阶段的梨形形态,贝氏体和泰勒虫属等寄生虫被称为血孢子虫。由于寄生虫种类繁多,多重 PCR 的挑战,使用血孢子虫特异性 PCR 对样品进行初步筛选可能是一种更具成本效益和效率的技术,可用于鉴定寄生虫种类,尤其是在流行病学研究中。因此,对来自不同动物(如牛、水牛、绵羊、山羊、狗、马和豹)的常见贝氏体和泰勒虫属进行了 18S rRNA PCR 的标准化和优化。

方法

从印度古吉拉特邦贾姆讷格尔区的不同动物中采集了 1250 份动物血液样本。18S rRNA PCR 被标准化和优化为在国内和野生动物中进行分子筛查的主要方法。该方法的分析灵敏度和特异性进行了检查。使用寄生虫种特异性 PCR 和测序来验证该检测。此外,还进行了体外限制性内切酶(RE)分析,以评估其在 PCR-RFLP 中的适用性。

结果

贾姆讷格尔区有 63.3%的动物记录有血孢子虫感染。18S rRNA PCR 可检测出低至 39 皮克(pg)全血基因组 DNA 中微镜检查阳性的泰氏泰勒虫属的血孢子虫 DNA,而常见但不相关的血液寄生虫(如伊氏锥虫、肝孢虫属、无形体属和犬埃立克体属)则没有反应。18S rRNA PCR 检测结果得到了种特异性 PCR 和测序的证实。使用 18S rRNA PCR 生成的不同序列分析表明,贝氏体属的扩增子大小接近 400 bp(393-408 bp),而泰勒虫属的则大于 400 bp(418-424 bp)。贝氏体属和泰勒虫属之间的序列差异百分比分别为 7.3-12.2%和 0.7-12.2%。体外酶切(RE)分析显示,在每个寄生虫的 18S rRNA 片段中至少存在一个用于市售 RE 的位点,这可以将其与同属寄生虫区分开来。

结论

本研究提出的基于通用寡核苷酸的 PCR 检测方法为感染家养和野生动物的血孢子虫的初始筛查提供了一种高度敏感、特异、经济有效的快速诊断工具,可能有助于大规模的流行病学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6914/9523193/ebd4c82ec3b2/11686_2022_625_Fig1_HTML.jpg

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