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干旱胁迫下[物种名称未给出]锌指蛋白基因亚家族的全基因组鉴定与表达分析

Genome-Wide Identification and Expression Analysis of the Zinc Finger Protein Gene Subfamilies under Drought Stress in .

作者信息

Wu Zhaoming, Shen Shenghai, Wang Yueduo, Tao Weiqi, Zhao Ziqi, Hu Xiangli, Yu Pei

机构信息

SDU-ANU Joint Science College, Shandong University, Weihai 264209, China.

Marine College, Shandong University, Weihai 264209, China.

出版信息

Plants (Basel). 2022 Sep 26;11(19):2511. doi: 10.3390/plants11192511.

Abstract

The zinc finger protein (ZFP) family is one of plants' most diverse family of transcription factors. These proteins with finger-like structural domains have been shown to play a critical role in plant responses to abiotic stresses such as drought. This study aimed to systematically characterize ZFPs (TaZFPs) and understand their roles under drought stress. A total of 9 TaC2H2, 38 TaC3HC4, 79 TaCCCH, and 143 TaPHD were identified, which were divided into 4, 7, 12, and 14 distinct subgroups based on their phylogenetic relationships, respectively. Segmental duplication dominated the evolution of four subfamilies and made important contributions to the large-scale amplification of gene families. Syntenic relationships, gene duplications, and Ka/Ks result consistently indicate a potential strong purifying selection on s. Additionally, s have various abiotic stress-associated -acting regulatory elements and have tissue-specific expression patterns showing different responses to drought and heat stress. Therefore, these genes may play multiple functions in plant growth and stress resistance responses. This is the first comprehensive genome-wide analysis of ZFP gene families in to elucidate the basis of their function and resistance mechanisms, providing a reference for precise manipulation of genetic engineering for drought resistance in .

摘要

锌指蛋白(ZFP)家族是植物中最多样化的转录因子家族之一。这些具有指状结构域的蛋白质已被证明在植物对干旱等非生物胁迫的响应中起关键作用。本研究旨在系统地表征锌指蛋白(TaZFPs)并了解它们在干旱胁迫下的作用。共鉴定出9个TaC2H2、38个TaC3HC4、79个TaCCCH和143个TaPHD,它们分别根据系统发育关系分为4个、7个、12个和14个不同的亚组。片段重复在四个亚科的进化中占主导地位,并对基因家族的大规模扩增做出了重要贡献。共线性关系、基因重复和Ka/Ks结果一致表明对s有潜在的强烈纯化选择。此外,s具有各种与非生物胁迫相关的顺式作用调控元件,并具有组织特异性表达模式,显示出对干旱和热胁迫的不同反应。因此,这些基因可能在植物生长和抗逆反应中发挥多种功能。这是首次对小麦中的ZFP基因家族进行全基因组综合分析,以阐明其功能基础和抗性机制,为小麦抗旱基因工程的精确操作提供参考。

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