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和及其合成二硫化物类似物中的吡啶-N-氧化物生物碱作为抗 的潜在药物候选物:一种基于分子对接、QSAR 和 ADMET 预测的方法。

Pyridine-N-Oxide Alkaloids from and Their Synthetic Disulfide Analogs as Potential Drug Candidates against : A Molecular Docking, QSBAR, and ADMET Prediction Approach.

机构信息

Department of Pharmaceutical Chemistry, School of Pharmacy, University of Health and Allied Sciences, Ho, Ghana.

Department of Pharmacology, Faculty of Pharmacy and Pharmaceutical Sciences, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.

出版信息

Biomed Res Int. 2022 Oct 7;2022:6261528. doi: 10.1155/2022/6261528. eCollection 2022.

Abstract

In this study, we consider pyridine-N-oxide alkaloids from and their synthetic disulfide analogs (PDAs) as candidates for next-generational antimycobacterial agents, in light of growing resistance to existing conventional therapies. studies involving molecular docking simulations of 12 PDAs were carried out against 7 target proteins (MTs) to determine their theoretical binding affinities. Compounds A3, A6, and B9 demonstrated stronger binding affinities on similar MTs. Molecular descriptors (MDs) describing structural and physicochemical properties of the compounds were also calculated using ChemDes, explored using Pearson's correlation analysis, and principal component analysis (PCA) in comparison with MDs from conventional antitubercular medicines. The PDAs possessed similar scores as isoniazid and pyrazinamide. The MDs were also used to conduct a quantitative structure-binding affinity relationship (QSBAR) study by building good fit and significant models through principal component regression (PCR) and partial least squares regression (PLSR). Leave-one-out cross-validation was adopted in the PLSR, resulting in good predictive models on all MTs (range of = 0.7541-0.8992; range of = 0.6183-0.8162). Both PCR and PLSR models predicted the significant effects of ndonr, Hy, Mol wt, nhev, nring, ndb, Log P, W, Pol, ISIZ, TIAC, Getov, and UI on the binding of ligands to the MTs. prediction of PDAs' ADMET profiles was conducted with QikProp utility. The ADMET profiles of the compounds were favorable. The outcome of the current study strengthens the significance of these compounds as promising lead candidates for the treatment of multidrug-resistant tuberculosis.

摘要

在这项研究中,我们考虑将吡啶-N-氧化物生物碱和它们的合成二硫化物类似物(PDAs)作为下一代抗分枝杆菌药物的候选物,因为现有的常规疗法的耐药性不断增加。进行了涉及 12 种 PDAs 与 7 个靶标蛋白(MTs)的分子对接模拟研究,以确定它们的理论结合亲和力。化合物 A3、A6 和 B9 在相似的 MTs 上表现出更强的结合亲和力。使用 ChemDes 计算描述化合物结构和物理化学性质的分子描述符(MDs),并使用 Pearson 相关分析进行探索,与传统抗结核药物的 MDs 进行比较。PDAs 具有与异烟肼和吡嗪酰胺相似的评分。还使用 MDs 进行定量构效关系(QSAR)研究,通过主成分回归(PCR)和偏最小二乘回归(PLSR)构建良好拟合和显著模型。在 PLSR 中采用了留一法交叉验证,结果表明所有 MTs 的预测模型都很好(范围为 0.7541-0.8992;范围为 0.6183-0.8162)。PCR 和 PLSR 模型都预测了 ndonr、Hy、Mol wt、nhev、nring、ndb、Log P、W、Pol、ISIZ、TIAC、Getov 和 UI 对配体与 MTs 结合的显著影响。使用 QikProp 实用程序对 PDAs 的 ADMET 概况进行了预测。化合物的 ADMET 概况良好。本研究的结果增强了这些化合物作为治疗耐多药结核病有前途的先导候选物的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30c9/9568345/a12d578e3557/BMRI2022-6261528.001.jpg

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