Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Technická 5, 16628, Prague 6, Czech Republic.
Bacterial Metabolomics, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2022 Oct;72(10). doi: 10.1099/ijsem.0.005541.
An aerobic, Gram-stain-positive and non-spore-forming strain, designated C1-1, was isolated from a fellfield soil sample collected from frost-sorted polygons on Jane Col, Signy Island, Maritime Antarctic. Cells with a size of 0.65-0.9×1.2-1.7 µm have a flagellar motile apparatus and exhibit a rod-coccus growth cycle. Optimal growth conditions were observed at 15-20 °C, pH 7.0 and NaCl concentration up to 0.5 % (w/v) in the medium. The 16S rRNA gene sequence of C1-1 showed the highest pairwise similarity of 98.77 % to NBRC 113092. Phylogenetic trees based on the 16S rRNA and whole-genome sequences revealed that strain C1-1 belongs to the genus and is most closely related to members of the ' group'. The G+C content of genomic DNA was 58.95 mol%. The original and orthologous average nucleotide identities between strain C1-1 and NBRC 113092 were 77.15 % and 77.38 %, respectively. The digital DNA-DNA relatedness values between strain C1-1 and NBRC 113092 was 21.6 %. The polar lipid profile was composed mainly of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and an unidentified glycolipid. The predominant cellular fatty acids were anteiso-C (75 %) and anteiso-C (15.2 %). Menaquinone MK-9(H) (86.4 %) was the major respiratory quinone in strain C1-1. The peptidoglycan type was determined as A3α (l-Lys-l-Ala; A11.6). Based on all described phylogenetic, physiological and chemotaxonomic characteristics, we propose that strain C1-1 (=DSM 112353=CCM 9148) is the type strain of a novel species sp. nov.
一株好氧、革兰氏阳性、不产芽孢的菌株,被命名为 C1-1,是从南极海洋 Signy 岛上 Jane Col 的霜裂多边形采集的一个冻原土壤样本中分离得到的。细胞大小为 0.65-0.9×1.2-1.7μm,具有鞭毛运动装置,表现出杆-球菌生长周期。在 15-20°C、pH7.0 和 NaCl 浓度高达 0.5%(w/v)的培养基中,观察到最佳生长条件。C1-1 的 16S rRNA 基因序列与 NBRC 113092 的相似性最高,为 98.77%。基于 16S rRNA 和全基因组序列的系统发育树表明,菌株 C1-1 属于 属,与“ group”中的成员最为密切相关。基因组 DNA 的 G+C 含量为 58.95mol%。菌株 C1-1 与 NBRC 113092 的原始和直系同源平均核苷酸同一性分别为 77.15%和 77.38%。菌株 C1-1 与 NBRC 113092 的数字 DNA-DNA 相关性值为 21.6%。极性脂谱主要由二磷脂酰甘油、磷脂酰甘油、磷脂酰肌醇和一种未鉴定的糖脂组成。主要的细胞脂肪酸为anteiso-C(75%)和 anteiso-C(15.2%)。menaquinone MK-9(H)(86.4%)是菌株 C1-1 中的主要呼吸醌。肽聚糖类型为 A3α(l-Lys-l-Ala;A11.6)。基于所有描述的系统发育、生理和化学分类学特征,我们建议菌株 C1-1(=DSM 112353=CCM 9148)是一种新型物种的模式菌株 sp. nov.