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sp. nov.,微球菌科的一个新的耐寒成员,从南极野外土壤中分离得到。

sp. nov., a new cold-adapted member of the family Micrococcaceae isolated from Antarctic fellfield soil.

机构信息

Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Technická 5, 16628, Prague 6, Czech Republic.

Bacterial Metabolomics, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany.

出版信息

Int J Syst Evol Microbiol. 2022 Oct;72(10). doi: 10.1099/ijsem.0.005541.

Abstract

An aerobic, Gram-stain-positive and non-spore-forming strain, designated C1-1, was isolated from a fellfield soil sample collected from frost-sorted polygons on Jane Col, Signy Island, Maritime Antarctic. Cells with a size of 0.65-0.9×1.2-1.7 µm have a flagellar motile apparatus and exhibit a rod-coccus growth cycle. Optimal growth conditions were observed at 15-20 °C, pH 7.0 and NaCl concentration up to 0.5 % (w/v) in the medium. The 16S rRNA gene sequence of C1-1 showed the highest pairwise similarity of 98.77 % to NBRC 113092. Phylogenetic trees based on the 16S rRNA and whole-genome sequences revealed that strain C1-1 belongs to the genus and is most closely related to members of the ' group'. The G+C content of genomic DNA was 58.95 mol%. The original and orthologous average nucleotide identities between strain C1-1 and NBRC 113092 were 77.15 % and 77.38 %, respectively. The digital DNA-DNA relatedness values between strain C1-1 and NBRC 113092 was 21.6 %. The polar lipid profile was composed mainly of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and an unidentified glycolipid. The predominant cellular fatty acids were anteiso-C (75 %) and anteiso-C (15.2 %). Menaquinone MK-9(H) (86.4 %) was the major respiratory quinone in strain C1-1. The peptidoglycan type was determined as A3α (l-Lys-l-Ala; A11.6). Based on all described phylogenetic, physiological and chemotaxonomic characteristics, we propose that strain C1-1 (=DSM 112353=CCM 9148) is the type strain of a novel species sp. nov.

摘要

一株好氧、革兰氏阳性、不产芽孢的菌株,被命名为 C1-1,是从南极海洋 Signy 岛上 Jane Col 的霜裂多边形采集的一个冻原土壤样本中分离得到的。细胞大小为 0.65-0.9×1.2-1.7μm,具有鞭毛运动装置,表现出杆-球菌生长周期。在 15-20°C、pH7.0 和 NaCl 浓度高达 0.5%(w/v)的培养基中,观察到最佳生长条件。C1-1 的 16S rRNA 基因序列与 NBRC 113092 的相似性最高,为 98.77%。基于 16S rRNA 和全基因组序列的系统发育树表明,菌株 C1-1 属于 属,与“ group”中的成员最为密切相关。基因组 DNA 的 G+C 含量为 58.95mol%。菌株 C1-1 与 NBRC 113092 的原始和直系同源平均核苷酸同一性分别为 77.15%和 77.38%。菌株 C1-1 与 NBRC 113092 的数字 DNA-DNA 相关性值为 21.6%。极性脂谱主要由二磷脂酰甘油、磷脂酰甘油、磷脂酰肌醇和一种未鉴定的糖脂组成。主要的细胞脂肪酸为anteiso-C(75%)和 anteiso-C(15.2%)。menaquinone MK-9(H)(86.4%)是菌株 C1-1 中的主要呼吸醌。肽聚糖类型为 A3α(l-Lys-l-Ala;A11.6)。基于所有描述的系统发育、生理和化学分类学特征,我们建议菌株 C1-1(=DSM 112353=CCM 9148)是一种新型物种的模式菌株 sp. nov.

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