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利用线粒体基因组研究现存原始蜉蝣的遗传多样性和分化时间

The Genetic Diversity and the Divergence Time in Extant Primitive Mayfly, Ulmer, 1920 Using the Mitochondrial Genome.

机构信息

College of Chemistry and Life Science, Zhejiang Normal University, Jinhua 321004, China.

Department of Biology, Carleton University, Ottawa, ON K1S 5B6, Canada.

出版信息

Genes (Basel). 2022 Oct 2;13(10):1780. doi: 10.3390/genes13101780.

Abstract

In this study, the mitochondrial (mt) genomes of (Ephemeroptera: Siphluriscidae) were evaluated in specimens collected from two sites in China: Niutou Mountain, Zhejiang Province ( NTS) and Leigong Mountain, Guizhou Province ( LGS) and were successfully sequenced. The lengths of the mt genomes of NTS and LGS were 15,904 bp (ON729390) and 15,212 bp (ON729391), respectively. However, an in-depth comparison of the two mt genomes showed significant differences between the specimens collected from the two sites. A detailed analysis of the genetic distance between NTS and LGS was undertaken to further achieve an accurate delimitation of . The genetic distance between NTS and the other three species within Siphluriscidae was a high value, above 12.2%. The two mt genomes were used to reconstruct phylogenetic relationships and estimate divergence time. The results demonstrated robust differences between NTS and LGS, which revealed that a kind of cryptic species existed. Maximum likelihood (ML) and Bayesian inference (BI) analyses produced well-supported phylogenetic trees that showed evolutionary relationships between Siphluriscidae ((( HQ875717 + MF352165) + LGS) + NTS). The most recent common ancestor (MRCA) of four species within Siphluriscidae began to diversify during the Neogene [11.80 million years ago (Mya); 95% highest posterior densities (HPD) = 6.17-19.28 Mya], and NTS was first to diverge from the branches of LGS. In short, based on mitochondrial genomes, our results showed that the specimens collected from Leigong Mountain, Guizhou Province ( LGS) belonged to , and the specimens collected from Niutou Mountain, Zhejiang Province ( NTS) were a cryptic species of .

摘要

在这项研究中,评估了分别采自中国两个地点(浙江牛头山,NTS;贵州雷公山,LGS)的 Siphluriscidae (蜉蝣目:石蝇科)的线粒体(mt)基因组,并成功进行了测序。NTS 和 LGS 的 mt 基因组长度分别为 15904 bp(ON729390)和 15212 bp(ON729391)。然而,对这两个 mt 基因组的深入比较表明,两个地点采集的标本之间存在显著差异。对 NTS 和 LGS 之间的遗传距离进行了详细分析,以进一步准确界定。对 NTS 与 Siphluriscidae 内的其他三个种之间的遗传距离进行了分析,遗传距离值很高,超过 12.2%。这两个 mt 基因组被用于重建系统发育关系和估计分歧时间。结果表明,NTS 和 LGS 之间存在显著差异,这表明存在一种隐种。最大似然(ML)和贝叶斯推断(BI)分析产生了支持度良好的系统发育树,显示了 Siphluriscidae 之间的进化关系(((HQ875717 + MF352165) + LGS) + NTS)。Siphluriscidae 内四个种的最近共同祖先(MRCA)开始在新近纪(1180 万年前;95%最高后验密度(HPD)= 6.17-19.28 Mya)多样化,而 NTS 首先从 LGS 的分支中分化出来。总之,基于线粒体基因组,我们的结果表明,采自贵州雷公山(LGS)的标本属于 Siphluriscidae,而采自浙江牛头山(NTS)的标本是一个隐种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e45/9601863/9a5924e161a4/genes-13-01780-g001.jpg

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