Department of Biomedical Engineering, Northwestern University, Evanston, Illinois60208, United States.
Department of Chemistry, College of Staten Island, The City University of New York, Staten Island, New York10314, United States.
Biomacromolecules. 2022 Nov 14;23(11):4756-4765. doi: 10.1021/acs.biomac.2c00936. Epub 2022 Nov 1.
Hybrid membranes assembled from biological lipids and synthetic polymers are a promising scaffold for the reconstitution and utilization of membrane proteins. Recent observations indicate that inclusion of small fractions of polymer in lipid membranes can improve protein folding and function, but the exact structural and physical changes a given polymer sequence imparts on a membrane often remain unclear. Here, we use all-atom molecular dynamics simulations to study the structure of hybrid membranes assembled from DOPC phospholipids and PEO--PBD diblock copolymers. We verified our computational model using new and existing experimental data and obtained a detailed picture of the polymer conformations in the lipid membrane that we can relate to changes in membrane elastic properties. We find that inclusion of low polymer fractions induces transient packing defects into the membrane. These packing defects act as insertion sites for two model peptides, and in this way, small amounts of polymer content in lipid membranes can lead to large increases in peptide insertion rates. Additionally, we report the peptide conformational space in both pure lipid and hybrid membranes. Both membranes support similar alpha helical peptide structures, exemplifying the biocompatibility of hybrid membranes.
由生物脂质和合成聚合物组装而成的混合膜是重组和利用膜蛋白的有前途的支架。最近的观察表明,在脂质膜中包含少量的聚合物可以改善蛋白质的折叠和功能,但是给定聚合物序列对膜施加的确切结构和物理变化通常仍不清楚。在这里,我们使用全原子分子动力学模拟来研究由 DOPC 磷脂和 PEO-PBD 两亲嵌段共聚物组装而成的混合膜的结构。我们使用新的和现有的实验数据验证了我们的计算模型,并获得了我们可以与膜弹性性质变化相关联的脂质膜中聚合物构象的详细图片。我们发现,包含低聚合物分数会导致膜中出现瞬时包装缺陷。这些包装缺陷充当两个模型肽的插入位点,因此,脂质膜中少量的聚合物含量可以导致肽插入率的大幅增加。此外,我们报告了纯脂质和混合膜中的肽构象空间。两种膜都支持类似的α螺旋肽结构,证明了混合膜的生物相容性。