University of Michigan, Ann Arbor, Michigan48109, United States.
Institute for Systems Biology, Seattle, Washington98109, United States.
J Proteome Res. 2023 Apr 7;22(4):1024-1042. doi: 10.1021/acs.jproteome.2c00498. Epub 2022 Nov 1.
The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP) show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 407 (93.2%) of the 19 750 predicted proteins coded in the human genome, a net gain of 50 since 2021 from data sets generated around the world and reanalyzed by the HPP. Conversely, the number of neXtProt PE2, PE3, and PE4 missing proteins has been reduced by 78 from 1421 to 1343. This represents continuing experimental progress on the human proteome parts list across all the chromosomes, as well as significant reclassifications. Meanwhile, applying proteomics in a vast array of biological and clinical studies continues to yield significant findings and growing integration with other omics platforms. We present highlights from the Chromosome-Centric HPP, Biology and Disease-driven HPP, and HPP Resource Pillars, compare features of mass spectrometry and Olink and Somalogic platforms, note the emergence of translation products from ribosome profiling of small open reading frames, and discuss the launch of the initial HPP Grand Challenge Project, "A Function for Each Protein".
2022 年人类蛋白质组组织(HUPO)人类蛋白质组计划(HPP)的指标显示,现在已经可信地检测到(NextProt PE1 水平)人类基因组中 19750 个预测蛋白编码中的 18407 个(93.2%),比 2021 年增加了 50 个,这些数据来自世界各地生成的数据集,并由 HPP 重新分析。相反,NextProt PE2、PE3 和 PE4 缺失蛋白的数量从 1421 个减少到 1343 个,减少了 78 个。这代表着在所有染色体上的人类蛋白质组部分清单上的实验进展不断,同时也进行了大量的重新分类。同时,在大量的生物学和临床研究中应用蛋白质组学技术继续产生重要发现,并与其他组学平台不断融合。我们从染色体中心 HPP、生物学和疾病驱动的 HPP 以及 HPP 资源支柱中展示了亮点,比较了质谱和 Olink 和 Somalogic 平台的特点,注意到从小开放阅读框核糖体图谱中翻译产物的出现,并讨论了初始 HPP 大挑战项目“每个蛋白质的功能”的启动。