Roet Sander, Zhang Daniel T, van Erp Titus S
Department of Chemistry, Norwegian University of Science and Technology (NTNU), N-7491Trondheim, Norway.
J Phys Chem A. 2022 Dec 1;126(47):8878-8886. doi: 10.1021/acs.jpca.2c06004. Epub 2022 Nov 17.
We developed a replica exchange method that is effectively parallelizable even if the computational cost of the Monte Carlo moves in the parallel replicas are considerably different, for instance, because the replicas run on different types of processor units or because of the algorithmic complexity. To prove detailed-balance, we make a paradigm shift from the common conceptual viewpoint in which the set of parallel replicas represents a high-dimensional superstate, to an ensemble-based criterion in which the other ensembles represent an environment that might or might not participate in the Monte Carlo move. In addition, based on a recent algorithm for computing permanents, we effectively increase the exchange rate to infinite without the steep factorial scaling as a function of the number of replicas. We illustrate the effectiveness of this replica exchange methodology by combining it with a quantitative path sampling method, replica exchange transition interface sampling (RETIS), in which the costs for a Monte Carlo move can vary enormously as paths in a RETIS algorithm do not have the same length and the average path lengths tend to vary considerably for the different path ensembles that run in parallel. This combination, coined ∞RETIS, was tested on three model systems.
我们开发了一种复制交换方法,即使并行副本中的蒙特卡罗移动的计算成本有很大差异,例如因为副本在不同类型的处理器单元上运行或由于算法复杂性,该方法也能有效地并行化。为了证明细致平衡,我们进行了范式转变,从常见的概念观点(其中并行副本集代表一个高维超态)转变为基于系综的标准,在该标准中,其他系综代表可能参与或不参与蒙特卡罗移动的环境。此外,基于最近一种计算永久式的算法,我们有效地将交换率提高到无穷大,而不会随着副本数量呈阶乘急剧缩放。我们通过将这种复制交换方法与定量路径采样方法——复制交换过渡界面采样(RETIS)相结合,来说明这种复制交换方法的有效性,在RETIS算法中,由于路径长度不同且并行运行的不同路径系综的平均路径长度往往差异很大,蒙特卡罗移动的成本可能会有巨大变化。这种组合被称为∞RETIS,并在三个模型系统上进行了测试。