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生物信息学分析肾透明细胞癌免疫相关预后基因与免疫治疗。

Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma.

机构信息

Institute of Organ Transplantation, Tongji Hospital, Key Laboratory of Organ Transplantation, Ministry of Education, NHC Key Laboratory of Organ Transplantation, Key Laboratory of Organ Transplantation, Chinese Academy of Medical Sciences, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

PLoS One. 2022 Nov 23;17(11):e0272542. doi: 10.1371/journal.pone.0272542. eCollection 2022.

Abstract

Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P<0.1). In conclusion, four genes that may serve as potential biomarkers in ccRCC were identified with respect to prognosis.

摘要

透明细胞肾细胞癌(ccRCC)是一种免疫原性肿瘤,研究其免疫相关基因至关重要。为了研究 ccRCC 的免疫预后基因,我们使用生物信息学方法分析了从公共数据库(癌症基因组图谱(TCGA)数据库和基因表达综合数据库(GEO))中收集的数据。然后,构建了一个免疫预后模型,以识别出 4 个对 ccRCC 患者预后具有中等预测价值的关键基因。这四个基因基于 Oncomine 和 Gena Expression Profiling Interactive Analysis (GEPIA) 数据库与 ccRCC 患者的预后相关。免疫浸润、免疫检查点和免疫治疗与该免疫预后模型之间的相关性分析表明,免疫浸润可以预测免疫治疗效果。我们还进行了定量实时聚合酶链反应分析,发现三个关键基因的表达与肿瘤进展相关(P<0.1)。总之,我们鉴定了四个可能作为 ccRCC 潜在生物标志物的基因与预后有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/718f/9683592/cfdc7e35a9fa/pone.0272542.g001.jpg

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