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基因组分析阐明一种新嗜盐菌的木质纤维素降解能力。

Genomic Analysis to Elucidate the Lignocellulose Degrading Capability of a New Halophile .

机构信息

Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Skudai 81310, Johor, Malaysia.

Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK.

出版信息

Genes (Basel). 2022 Nov 17;13(11):2135. doi: 10.3390/genes13112135.

Abstract

is a proposed marine bacterium isolated from mangrove soil. So far, the study of this bacterium is limited to taxonomy only. In this report, we performed a genomic analysis of that revealed its lignocellulose degrading ability. Genome mining of revealed a total of 87 lignocellulose degrading enzymes. These enzymes include cellulases (GH3, GH5, GH9 and GH30), xylanases (GH5, GH10, GH43, GH51, GH67, and GH115), mannanases (GH2, GH26, GH27 and GH113) and xyloglucanases (GH2, GH5, GH16, GH29, GH31 and GH95). Most of the lignocellulolytic enzymes encoded in were absent in the genome of , the closest member from the same genus. Furthermore, current work also demonstrated the ability of to produce lignocellulolytic enzymes to deconstruct oil palm empty fruit bunch (EFB), a lignocellulosic waste found abundantly in palm oil industry. The metabolic pathway taken by to transport and process the reducing sugars after the action of lignocellulolytic enzymes on EFB was also inferred based on genomic data. Collectively, genomic analysis coupled with experimental studies elucidated to serve as a promising candidate in seawater based-biorefinery industry.

摘要

是一种从红树林土壤中分离出来的海洋细菌。到目前为止,对该细菌的研究仅限于分类学。在本报告中,我们对 进行了基因组分析,结果表明其具有木质纤维素降解能力。对 的基因组挖掘共揭示了 87 种木质纤维素降解酶。这些酶包括纤维素酶(GH3、GH5、GH9 和 GH30)、木聚糖酶(GH5、GH10、GH43、GH51、GH67 和 GH115)、甘露聚糖酶(GH2、GH26、GH27 和 GH113)和木葡聚糖酶(GH2、GH5、GH16、GH29、GH31 和 GH95)。在 中编码的大多数木质纤维素降解酶在同属的最接近的成员 的基因组中不存在。此外,目前的工作还证明了 能够产生木质纤维素降解酶来解构油棕空果串(EFB),这是棕榈油工业中大量存在的木质纤维素废物。根据基因组数据,还推断了 在木质纤维素降解酶作用于 EFB 后,用于运输和处理还原糖的代谢途径。总的来说,基因组分析与实验研究相结合,阐明 作为海水基生物炼制工业有前途的候选者。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a91/9690682/59e13e8c9b6e/genes-13-02135-g001.jpg

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