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一项全基因组关联研究鉴定了英国生物库中来自欧洲和非洲血统的人群中与肺功能相关的不同变体。

A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank.

机构信息

Computational Biology Division, Faculty of Health Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Rd, Observatory, 7925, Cape Town, South Africa.

Pharmacogenetics Research Clinic, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada.

出版信息

Commun Biol. 2023 Jan 14;6(1):49. doi: 10.1038/s42003-023-04443-8.

DOI:10.1038/s42003-023-04443-8
PMID:36641522
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9840173/
Abstract

Pulmonary function is an indicator of well-being, and pulmonary pathologies are the third major cause of death worldwide. We analysed the UK Biobank genome-wide association summary statistics of pulmonary function for Europeans and individuals of recent African descent to identify variants associated with the trait in the two ancestries. Here, we show 627 variants in Europeans and 3 in Africans associated with three pulmonary function parameters. In addition to the 110 variants in Europeans previously reported to be associated with phenotypes related to pulmonary function, we identify 279 novel loci, including an ISX intergenic variant rs369476290 on chromosome 22 in Africans. Remarkably, we find no shared variants among Africans and Europeans. Furthermore, enrichment analyses of variants separately for each ancestry background reveal significant enrichment for terms related to pulmonary phenotypes in Europeans but not Africans. Further analysis of studies of pulmonary phenotypes reveals that individuals of European background are disproportionally overrepresented in datasets compared to Africans, with the gap widening over the past five years. Our findings extend our understanding of the different variants that modify the pulmonary function in Africans and Europeans, a promising finding for future GWASs and medical studies.

摘要

肺功能是健康的一个指标,肺部疾病是全球第三大致死原因。我们分析了英国生物库中欧洲人和新近具有非洲血统个体的肺功能全基因组关联汇总统计数据,以鉴定这两个群体中与该特征相关的变异。在这里,我们在欧洲人群中发现了 627 个与三种肺功能参数相关的变异,在非洲人群中发现了 3 个。除了之前报道与肺功能相关表型相关的 110 个在欧洲人群中与肺功能相关的表型相关的变异外,我们还鉴定了 279 个新的基因座,包括非洲人群中位于 22 号染色体上的 ISX 基因间变异 rs369476290。值得注意的是,我们在非洲人群和欧洲人群中没有发现共享的变异。此外,分别对每个祖先背景的变异进行富集分析表明,在欧洲人群中与肺表型相关的术语显著富集,但在非洲人群中没有。对肺表型研究的进一步分析表明,与非洲人相比,欧洲背景的个体在数据集的代表性不成比例地过高,而且这种差距在过去五年中还在扩大。我们的研究结果扩展了我们对不同变异的理解,这些变异可以改变欧洲人和非洲人的肺功能,这是未来全基因组关联研究和医学研究的一个很有前景的发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/20deffdd42b7/42003_2023_4443_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/8b33a040d564/42003_2023_4443_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/20deffdd42b7/42003_2023_4443_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/8b33a040d564/42003_2023_4443_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/8200ed173f82/42003_2023_4443_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/35667bb19bbf/42003_2023_4443_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/619d/9840640/af775714a925/42003_2023_4443_Fig4_HTML.jpg
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