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潜在喹啉分子对V30M突变型转甲状腺素蛋白的结构修复和聚集体抑制作用

Structure restoration and aggregate inhibition of V30M mutant transthyretin protein by potential quinoline molecules.

作者信息

Kumar Sachin, Bhardwaj Vijay Kumar, Singh Rahul, Purohit Rituraj

机构信息

Structural Bioinformatics Lab, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, HP 176061, India; Biotechnology Division, CSIR-IHBT, Palampur, HP 176061, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India.

Structural Bioinformatics Lab, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, HP 176061, India; Biotechnology Division, CSIR-IHBT, Palampur, HP 176061, India; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, India.

出版信息

Int J Biol Macromol. 2023 Mar 15;231:123318. doi: 10.1016/j.ijbiomac.2023.123318. Epub 2023 Jan 18.

Abstract

Transthyretin (TTR) is a tetrameric protein found in human plasma and cerebrospinal fluid that functions as a transporter of thyroxine (T4) and retinol. A mutation resulting in the substitution of valine to methionine at position 30 (V30M) is the most common mutation that destabilizes the tetramer structure of TTR protein resulting in a fatal neuropathy known as TTR amyloidosis. The V30M TTR-induced neuropathy can be inhibited through stabilization of the TTR tetramer by the binding of small molecules. We accessed the potential of in-house synthesized quinoline molecules to stabilize the V30M TTR structure and analyzed the impact of protein-ligand interactions through molecular docking, molecular dynamics (MD) simulations, steered MD, and umbrella sampling simulations. This study revealed that the binding of quinoline molecules reverted back the structural changes including the residual flexibility, changes in secondary structural elements, and also restored the alterations in the electrostatic surface potential induced by the V30M mutation. Further, the top-most 4G and 4R molecules were compared with an FDA-approved drug (Tafamidis) and a reference quinoline molecule 14C. Here, we intend to suggest that the quinoline molecules could revert the structural changes, cease tetramer dissociation, prevent abnormal oligomerization and therefore could be developed as an effective therapeutics against TTR amyloidosis.

摘要

转甲状腺素蛋白(TTR)是一种在人血浆和脑脊液中发现的四聚体蛋白,其功能是作为甲状腺素(T4)和视黄醇的转运蛋白。导致第30位缬氨酸被甲硫氨酸替代(V30M)的突变是最常见的突变,它会破坏TTR蛋白的四聚体结构,导致一种致命的神经病变,称为TTR淀粉样变性。V30M TTR诱导的神经病变可通过小分子结合稳定TTR四聚体来抑制。我们研究了内部合成的喹啉分子稳定V30M TTR结构的潜力,并通过分子对接、分子动力学(MD)模拟、引导MD和伞形采样模拟分析了蛋白质-配体相互作用的影响。这项研究表明,喹啉分子的结合逆转了包括残余柔性、二级结构元件变化在内的结构变化,还恢复了V30M突变引起的静电表面电位的改变。此外,将排名最靠前的4G和4R分子与一种FDA批准的药物(塔非酰胺)和一种参考喹啉分子14C进行了比较。在此,我们认为喹啉分子可以逆转结构变化,停止四聚体解离,防止异常寡聚化,因此可以开发成为一种针对TTR淀粉样变性的有效治疗药物。

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