Ellis Charles A, Miller Robyn L, Calhoun Vince D
Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States.
Tri-institutional Center for Translational Research in Neuroimaging and Data Science: Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia, United States.
bioRxiv. 2023 Feb 14:2023.02.13.528329. doi: 10.1101/2023.02.13.528329.
Dynamic functional network connectivity (dFNC) analysis of resting state functional magnetic resonance imaging data has yielded insights into many neurological and neuropsychiatric disorders. A common dFNC analysis approach uses hard clustering methods like k-means clustering to assign samples to states that summarize network dynamics. However, hard clustering methods obscure network dynamics by assuming (1) that all samples within a cluster are equally like their assigned centroids and (2) that samples closer to one another in the data space than to their centroids are well-represented by their centroids. In addition, it can be hard to compare subjects, as in some cases an individual may not manifest a state strongly enough to enter a hard cluster. Approaches that allow a dimensional approach to connectivity patterns (e.g., fuzzy clustering) can mitigate these issues. In this study, we present an explainable fuzzy clustering framework by combining fuzzy c-means clustering with several explainability metrics. We apply our framework for schizophrenia (SZ) default mode network analysis, identifying 5 states and characterizing those states with a new explainability approach. While also showing that features typically used in hard clustering can be extracted in our framework, we present a variety of unique features to quantify state dynamics and identify effects of SZ upon network dynamics. We further uncover relationships between symptom severity and interactions of the precuneus with the anterior and posterior cingulate cortex. Given the ease of implementing our framework and its enhanced insight into network dynamics, it has great potential for use in future dFNC studies.
静息态功能磁共振成像数据的动态功能网络连接性(dFNC)分析已为许多神经和神经精神疾病提供了见解。一种常见的dFNC分析方法使用硬聚类方法,如k均值聚类,将样本分配到总结网络动态的状态中。然而,硬聚类方法通过假设(1)一个聚类中的所有样本与其分配的质心同样相似,以及(2)在数据空间中彼此比其质心更接近的样本由其质心很好地表示,从而掩盖了网络动态。此外,比较受试者可能会很困难,因为在某些情况下,个体可能没有强烈表现出足以进入硬聚类的状态。允许对连接模式采用维度方法的方法(例如模糊聚类)可以缓解这些问题。在本研究中,我们通过将模糊c均值聚类与几个可解释性指标相结合,提出了一个可解释的模糊聚类框架。我们将我们的框架应用于精神分裂症(SZ)默认模式网络分析,识别出5种状态,并采用一种新的可解释性方法对这些状态进行表征。在表明我们的框架也可以提取硬聚类中通常使用的特征的同时,我们还提出了各种独特的特征来量化状态动态,并确定SZ对网络动态的影响。我们进一步揭示了症状严重程度与楔前叶与前扣带回和后扣带回皮质之间相互作用的关系。鉴于我们的框架易于实施且对网络动态有更深入的见解,它在未来的dFNC研究中具有很大的应用潜力。