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全面泛癌分析 KIF18A 作为预后和免疫标志物。

Comprehensive Pan-Cancer Analysis of KIF18A as a Marker for Prognosis and Immunity.

机构信息

Department of Pathology, Beijing Ditan Hospital, Capital Medical University, No. 8 Jing Shun East Street, Chaoyang District, Beijing 100015, China.

出版信息

Biomolecules. 2023 Feb 8;13(2):326. doi: 10.3390/biom13020326.

Abstract

KIF18A belongs to the Kinesin family, which participates in the occurrence and progression of tumors. However, few pan-cancer analyses have been performed on KIF18A to date. We used multiple public databases such as TIMER, The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), and Human Protein Atlas (HPA) to explore KIF18A mRNA expression in 33 tumors. We performed immunohistochemistry on liver cancer and pancreatic cancer tissues and corresponding normal tissues to examine the expression of KIF18A protein. Univariate Cox regression and Kaplan-Meier survival analysis were applied to detect the effect of KIF18A on overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) of patients with these tumors. Subsequently, we explored KIF18A gene alterations in different tumor tissues using cBioPortal. The relationship between KIF18A and clinical characteristics, tumor microenvironment (TME), immune regulatory genes, immune checkpoints, tumor mutational burden (TMB), microsatellite instability (MSI), mismatch repairs (MMRs), DNA methylation, RNA methylation, and drug sensitivity was applied for further study using the R language. Gene Set Enrichment Analysis (GSEA) was utilized to explore the molecular mechanism of KIF18A. Bioinformatic analysis and immunohistochemical experiments confirmed that KIF18A was up-regulated in 27 tumors and was correlated with the T stage, N stage, pathological stage, histological grade, and Ki-67 index in many cancers. The overexpression of KIF18A had poor OS, DSS, and PFI in adrenocortical carcinoma (ACC), kidney renal clear cell carcinoma (KIRC), kidney renal papillary cell carcinoma (KIRP), brain lower-grade glioma (LGG), liver cancer (LIHC), lung adenocarcinoma (LUAD), and pancreatic cancer (PAAD). Univariate and multivariate regression analysis confirmed KIF18A as an independent prognostic factor for LIHC and PAAD. The mutation frequency of KIF18A is the highest in endometrial cancer. KIF18A expression levels were positively associated with immunocyte infiltration, immune regulatory genes, immune checkpoints, TMB, MSI, MMRs, DNA methylation, RNA methylation, and drug sensitivity in certain cancers. In addition, we discovered that KIF18A participated in the cell cycle at the single-cell level and GSEA analysis for most cancers. These findings suggested that KIF18A could be regarded as a latent prognostic marker and a new target for cancer immunological therapy.

摘要

KIF18A 属于驱动蛋白家族,参与肿瘤的发生和发展。然而,目前为止,针对 KIF18A 的泛癌症分析还很少。我们使用了多个公共数据库,如 TIMER、癌症基因组图谱(TCGA)、基因型-组织表达(GTEx)和人类蛋白质图谱(HPA),来研究 33 种肿瘤中 KIF18A mRNA 的表达。我们对肝癌和胰腺癌组织及其相应的正常组织进行了免疫组织化学染色,以检测 KIF18A 蛋白的表达情况。单因素 Cox 回归和 Kaplan-Meier 生存分析用于检测 KIF18A 对这些肿瘤患者总生存期(OS)、疾病特异性生存期(DSS)和无进展生存期(PFI)的影响。随后,我们使用 cBioPortal 研究了不同肿瘤组织中的 KIF18A 基因改变。我们使用 R 语言进一步研究了 KIF18A 与临床特征、肿瘤微环境(TME)、免疫调节基因、免疫检查点、肿瘤突变负荷(TMB)、微卫星不稳定性(MSI)、错配修复(MMRs)、DNA 甲基化、RNA 甲基化和药物敏感性之间的关系。基因集富集分析(GSEA)用于探索 KIF18A 的分子机制。生物信息学分析和免疫组织化学实验证实,KIF18A 在 27 种肿瘤中上调,并与许多癌症中的 T 分期、N 分期、病理分期、组织学分级和 Ki-67 指数相关。KIF18A 的过表达与肾上腺皮质癌(ACC)、肾透明细胞癌(KIRC)、肾乳头状细胞癌(KIRP)、脑低级别胶质瘤(LGG)、肝癌(LIHC)、肺腺癌(LUAD)和胰腺癌(PAAD)的 OS、DSS 和 PFI 较差相关。单因素和多因素回归分析证实 KIF18A 是 LIHC 和 PAAD 的独立预后因素。在子宫内膜癌中,KIF18A 的突变频率最高。在某些癌症中,KIF18A 表达水平与免疫细胞浸润、免疫调节基因、免疫检查点、TMB、MSI、MMRs、DNA 甲基化、RNA 甲基化和药物敏感性呈正相关。此外,我们发现 KIF18A 在单细胞水平上参与细胞周期,并且大多数癌症的 GSEA 分析也证实了这一点。这些发现表明,KIF18A 可以作为一种潜在的预后标志物和癌症免疫治疗的新靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/394b/9953516/d3b6af933bf5/biomolecules-13-00326-g001a.jpg

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