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基于铁死亡相关基因的卵巢癌新型预后标志物的鉴定与验证

Identification and Validation of a Novel Prognostic Signature Based on Ferroptosis-Related Genes in Ovarian Cancer.

作者信息

Cheng Zhe, Chen Yongheng, Huang Huichao

机构信息

Department of Oncology, NHC Key Laboratory of Cancer Proteomics, Laboratory of Structural Biology, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha 410008, China.

Department of Infectious Disease, NHC Key Laboratory of Cancer Proteomics, Laboratory of Structural Biology, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha 410008, China.

出版信息

Vaccines (Basel). 2023 Jan 17;11(2):205. doi: 10.3390/vaccines11020205.

Abstract

BACKGROUND

Ovarian cancer is the most lethal gynecological tumor, with a poor prognosis due to the lack of early symptoms, resistance to chemotherapy, and recurrence. Ferroptosis belongs to the regulated cell death family, and is characterized by iron-dependent processes. Here, comprehensive bioinformatics analysis was applied to explore a valuable prognostic model based on ferroptosis-related genes, which was further validated in clinical OC samples.

METHODS

mRNA data of normal and ovarian tumor samples were obtained separately from the GTEx and TCGA databases. The least absolute shrinkage and selection operator (LASSO) cox regression was applied to construct the prognostic model based on ferroptosis-associated genes. Expression of ALOX12 in OC cell lines, as well as cell functions, including proliferation and migration, were examined. Finally, the prognostic efficiency of the model was assessed in the clinical tissues of OC patients.

RESULTS

A gene signature consisting of ALOX12, RB1, DNAJB6, STEAP3, and SELENOS was constructed. The signature divided TCGA, ICGC, and GEO cohorts into high-risk and low-risk groups separately. Receiver operating characteristic (ROC) curves and independent prognostic factor analysis were carried out, and the prognostic efficacy was validated. The expression levels of ALOX12 in cell lines were examined. Inhibition of ALOX12 attenuated cell proliferation and migration in HEY cells. Moreover, the prognostic value of ALOX12 expression was examined in clinical samples of OC patients.

CONCLUSION

This work constructed a novel ferroptosis-associated gene model. Furthermore, the clinical predictive role of ALOX12 was identified in OC patients, suggesting that ALOX12 might act as a potential prognostic tool and therapeutic target for OC patients.

摘要

背景

卵巢癌是最致命的妇科肿瘤,由于缺乏早期症状、对化疗耐药以及复发,其预后较差。铁死亡属于程序性细胞死亡家族,其特征是依赖铁的过程。在此,应用综合生物信息学分析来探索基于铁死亡相关基因的有价值的预后模型,并在临床卵巢癌样本中进一步验证。

方法

分别从GTEx和TCGA数据库中获取正常和卵巢肿瘤样本的mRNA数据。应用最小绝对收缩和选择算子(LASSO)cox回归基于铁死亡相关基因构建预后模型。检测ALOX12在卵巢癌细胞系中的表达以及细胞功能,包括增殖和迁移。最后,在卵巢癌患者的临床组织中评估该模型的预后效率。

结果

构建了一个由ALOX12、RB1、DNAJB6、STEAP3和SELENOS组成的基因特征。该特征分别将TCGA、ICGC和GEO队列分为高风险组和低风险组。进行了受试者工作特征(ROC)曲线和独立预后因素分析,并验证了预后效果。检测了细胞系中ALOX12的表达水平。抑制ALOX12可减弱HEY细胞的增殖和迁移。此外,在卵巢癌患者的临床样本中检测了ALOX12表达的预后价值。

结论

本研究构建了一种新型的铁死亡相关基因模型。此外,确定了ALOX12在卵巢癌患者中的临床预测作用,表明ALOX12可能作为卵巢癌患者潜在的预后工具和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/921e/9962729/0eda35483d47/vaccines-11-00205-g001.jpg

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