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多价噬菌体 fp01 的比较基因组学及其受体结合蛋白和保守肠杆菌噬菌体受体的计算机分析。

Comparative Genomics of a Polyvalent Phage fp01 and In Silico Analysis of Its Receptor Binding Protein and Conserved Enterobacteriaceae Phage Receptor.

机构信息

Marine Microbial Pathogenesis and Vaccinology Laboratory, Department of Ocean Science, Memorial University, St. John's, NL A1C 5S7, Canada.

Instituto de Ciencias Naturales, Universidad de las Américas, Viña del Mar 2520000, Chile.

出版信息

Viruses. 2023 Jan 28;15(2):379. doi: 10.3390/v15020379.

Abstract

The polyvalent bacteriophage fp01, isolated from wastewater in Valparaiso, Chile, was described to have lytic activity across bacterial species, including and enterica serovars. Due to its polyvalent nature, the bacteriophage fp01 has potential applications in the biomedical, food and agricultural industries. Also, fundamental aspects of polyvalent bacteriophage biology are unknown. In this study, we sequenced and described the complete genome of the polyvalent phage fp01 (MH745368.2) using long- (MinION, Nanopore) and short-reads (MiSeq, Illumina) sequencing. The bacteriophage fp01 genome has 109,515 bp, double-stranded DNA with an average G+C content of 39%, and 158 coding sequences (CDSs). Phage fp01 has genes with high similarity to , , and sp. phages. Phylogenetic analyses indicated that the phage fp01 is a new fp01 specie. Receptor binding protein gp108 was identified as potentially responsible for fp01 polyvalent characteristics, which binds to conserved amino acid regions of the FhuA receptor of Enterobacteriaceae.

摘要

多价噬菌体 fp01 从智利瓦尔帕莱索的废水中分离出来,被描述为对包括 和 肠杆菌血清型具有裂解活性。由于其多价性质,噬菌体 fp01 在生物医学、食品和农业领域具有潜在的应用。此外,多价噬菌体生物学的基本方面尚不清楚。在这项研究中,我们使用长读(MinION、Nanopore)和短读(MiSeq、Illumina)测序对多价噬菌体 fp01(MH745368.2)进行了测序和描述。噬菌体 fp01 基因组有 109515bp,双链 DNA,平均 G+C 含量为 39%,有 158 个编码序列(CDS)。噬菌体 fp01 有与 、 、 和 属噬菌体高度相似的基因。系统发育分析表明,噬菌体 fp01 是一种新的 fp01 种。受体结合蛋白 gp108 被鉴定为可能导致 fp01 多价特性的原因,它与肠杆菌科的 FhuA 受体的保守氨基酸区域结合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0e/9961651/a40be2e08b59/viruses-15-00379-g001.jpg

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