Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
J Phys Chem A. 2023 Mar 16;127(10):2215-2227. doi: 10.1021/acs.jpca.2c06624. Epub 2023 Mar 7.
We have studied the effect of amino acids on the electron attachment properties of a DNA nucleobase, with cytosine as a model system. The equation of motion coupled cluster theory with an extended basis set has been used to simulate the electron-attached state of the DNA model system. Arginine, alanine, lysine, and glycine are the four amino acids considered to investigate their role in electron attachment to a DNA nucleobase. The electron attachment to cytosine in all the four cytosine-amino acid gas-phase dimer complexes follows a doorway mechanism, where the electron gets transferred from the initial dipole-bound doorway state to the final nucleobase-bound state through the mixing of electronic and nuclear degrees of freedom. When cytosine is bulk-solvated with glycine, the glycine-bound state acts as the doorway state, where the initial electron density is localized on the bulk amino acid and away from the nucleobase, thus leading to the physical shielding of the nucleobase from the incoming electron. At the same time, the presence of amino acids can increase the stability of the nucleobase-bound anionic state, which can suppress the sugar-phosphate bond rupture caused by dissociative electron attachment to DNA.
我们研究了氨基酸对 DNA 碱基电子附加性质的影响,以胞嘧啶作为模型体系。我们使用运动方程耦合簇理论和扩展基组来模拟 DNA 模型系统的电子附加态。精氨酸、丙氨酸、赖氨酸和甘氨酸是被考虑的四种氨基酸,以研究它们在 DNA 碱基电子附加中的作用。在所有四种胞嘧啶-氨基酸气相二聚体复合物中,电子附加到胞嘧啶都遵循门户机制,其中电子通过电子和核自由度的混合,从初始偶极束缚的门户状态转移到最终碱基束缚的状态。当胞嘧啶与甘氨酸整体溶剂化时,甘氨酸束缚态作为门户态,其中初始电子密度定域在整体氨基酸上,远离碱基,从而导致碱基从传入电子中物理屏蔽。同时,氨基酸的存在可以增加碱基束缚阴离子态的稳定性,从而抑制由于 DNA 电子离解附加而导致的糖-磷酸键断裂。