Inoue Yuya, Nakahara-Tsubota Miho, Ogiso-Tanaka Eri, Tsubota Hiromi
Department of Botany, National Museum of Nature and Science, Ibaraki, Japan.
Hattori Botanical Laboratory, Miyazaki, Japan.
Mitochondrial DNA B Resour. 2023 Mar 8;8(3):383-388. doi: 10.1080/23802359.2023.2185465. eCollection 2023.
The moss family Pottiaceae is one of the most diverse lineages of the subclass Dicranidae (haplolepideous mosses). Nevertheless, the phylogenetic relationships of Pottiaceae with other Dicranidae families remain unclear. To better understand the ancestral genomic structure and evolution of the Pottiaceae, herein, we present the chloroplast and mitochondrial genomes of (Ditrichaceae, Bryophyta). The chloroplast genome is 124,628 bp long and displayed a circular structure composed of a large single-copy region, a small single-copy region, and a pair of inverted repeats. It has 118 genes, including 82 protein-coding genes, 32 tRNA genes, and four rRNA genes. The mitochondrial genome is 106,246 bp long and has a circular structure. It contains 67 genes, including 40 protein-coding genes, 24 tRNA genes, and three rRNA genes. Phylogenetic trees based on the coding sequences strongly support the sister relationship of with all Pottiaceous accessions, and the dextrosely arranged operculum cells suggest its affinity for Pottiaceae. This study also demonstrates that long-read sequencing employing the Nanopore platform facilitates the repair of unassembled or misassembled organellar genomic regions.
丛藓科是曲尾藓亚纲(单系藓类)中最多样化的谱系之一。然而,丛藓科与其他曲尾藓亚纲科之间的系统发育关系仍不清楚。为了更好地了解丛藓科的祖先基因组结构和进化,在此,我们展示了[某种藓类植物](藓纲丛藓科)的叶绿体和线粒体基因组。叶绿体基因组长度为124,628 bp,呈环状结构,由一个大单拷贝区域、一个小单拷贝区域和一对反向重复序列组成。它有118个基因,包括82个蛋白质编码基因、32个tRNA基因和4个rRNA基因。线粒体基因组长度为106,246 bp,呈环状结构。它包含67个基因,包括40个蛋白质编码基因、24个tRNA基因和3个rRNA基因。基于编码序列的系统发育树有力地支持了[该藓类植物]与所有丛藓科类群的姐妹关系,并且右旋排列的蒴盖细胞表明它与丛藓科有亲缘关系。这项研究还表明,采用纳米孔平台的长读长测序有助于修复未组装或错误组装的细胞器基因组区域。