Holden James F, Sistu Harita
Department of Microbiology, University of Massachusetts, Amherst, MA, United States.
Front Microbiol. 2023 Mar 6;14:1093018. doi: 10.3389/fmicb.2023.1093018. eCollection 2023.
Extremely thermophilic methanogens in the and heterotrophs in the are common in deep-sea hydrothermal vents. All use H as an electron donor, and a few species can also use formate. Most have a coenzyme F-reducing formate dehydrogenase. All reduce S but have hydrogenases and produce H in the absence of S. Some have formate hydrogenlyase (Fhl) that reversibly converts H and CO to formate or an NAD(P)-reducing formate dehydrogenase (Nfd). Questions remain if or use or produce formate in nature, why only certain species can grow on or produce formate, and what the physiological role of formate is? Formate forms abiotically in hydrothermal fluids through chemical equilibrium with primarily H, CO, and CO and is strongly dependent upon H concentration, pH, and temperature. Formate concentrations are highest in hydrothermal fluids where H concentrations are also high, such as in ultramafic systems where serpentinization reactions occur. In nature, are likely to use formate as an electron donor when H is limiting. with Fhl likely convert H and CO to formate when H concentrations become inhibitory for growth. They are unlikely to grow on formate in nature unless formate is more abundant than H in the environment. Nearly all and have a gene for at least one formate dehydrogenase catalytic subunit, which may be used to provide free formate for purine biosynthesis. However, only species with a membrane-bound formate transporter can grow on or secrete formate. Interspecies H transfer occurs between and . This and putative interspecies formate transfer may support in low H environments, which in turn may prevent growth inhibition of by its own H. Future research directions include understanding when, where, and how formate is used and produced by these organisms in nature, and how transcription of genes encoding formate-related enzymes are regulated.
嗜热产甲烷菌和嗜热异养菌在深海热液喷口中很常见。所有嗜热产甲烷菌都以H2作为电子供体,少数物种也可以利用甲酸。大多数嗜热产甲烷菌具有辅酶F420还原型甲酸脱氢酶。所有嗜热异养菌都能还原S0,但具有氢化酶,并且在没有S0的情况下产生H2。一些嗜热异养菌具有甲酸氢化酶(Fhl),可将H2和CO2可逆地转化为甲酸,或者具有NAD(P)+还原型甲酸脱氢酶(Nfd)。嗜热产甲烷菌或嗜热异养菌在自然环境中是否利用或产生甲酸、为什么只有某些物种能利用或产生甲酸以及甲酸的生理作用是什么等问题仍然存在。甲酸在热液流体中通过与主要是H2、CO2和CO的化学平衡非生物形成,并且强烈依赖于H2浓度、pH值和温度。在H2浓度也很高的热液流体中,如在发生蛇纹石化反应的超镁铁质系统中,甲酸浓度最高。在自然界中,当H2有限时,嗜热产甲烷菌可能会利用甲酸作为电子供体。具有Fhl的嗜热异养菌可能在H2浓度对生长产生抑制时将H2和CO2转化为甲酸。除非环境中甲酸比H2更丰富,否则它们在自然界中不太可能利用甲酸生长。几乎所有嗜热产甲烷菌和嗜热异养菌都有至少一个甲酸脱氢酶催化亚基的基因,该基因可能用于为嗜热产甲烷菌嘌呤生物合成提供游离甲酸。然而,只有具有膜结合型甲酸转运蛋白的物种才能利用或分泌甲酸生长。种间H2转移发生在嗜热产甲烷菌和嗜热异养菌之间。这种以及假定的种间甲酸转移可能在低H2环境中支持嗜热产甲烷菌,这反过来可能防止嗜热产甲烷菌因自身产生的H2而受到生长抑制。未来的研究方向包括了解这些生物体在自然界中何时、何地以及如何利用和产生甲酸,以及编码与甲酸相关酶的基因转录是如何调控的。