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矮蚱蜢转录组(直翅目:网翅蝗科)。

Transcriptome of the pygmy grasshopper (Orthoptera: Tetrigidae).

机构信息

Shaanxi Normal University, Xi'an, China.

出版信息

PeerJ. 2023 Mar 30;11:e15123. doi: 10.7717/peerj.15123. eCollection 2023.

Abstract

(Zheng, 1982) is a tiny grasshopper endemic to Qinling in China. For further study of its transcriptomic features, we obtained RNA-Seq data by Illumina HiSeq X Ten sequencing platform. Firstly, transcriptomic analysis showed that transcriptome read numbers of two female and one male samples were 25,043,314, 24,429,905, and 25,034,457, respectively. We assembled 65,977 unigenes, their average length was 1,072.09 bp, and the length of N50 was 2,031 bp. The average lengths of female and male unigenes were 911.30 bp, and 941.82 bp, and the N50 lengths were 1,745 bp and 1,735 bp, respectively. Eight databases were used to annotate the functions of unigenes, and 23,268 functional unigenes were obtained. Besides, we also studied the body color, immunity and insecticide resistance of Thirty-nine pigment-related genes were annotated. Some immunity genes and signaling pathways were found, such as JAK-STAT and Toll-LIKE receptor signaling pathways. There are also some insecticide resistance genes and signal pathways, like nAChR, GST and DDT. Further, some of these genes were differentially expressed in female and male samples, including pigment, immunity and insecticide resistance. The transcriptomic study of will provide data reference for gene prediction and molecular expression study of other Tetrigidae species in the future. Differential genetic screening of males and females provides a basis for studying sex and immune balance in insects.

摘要

(Zheng, 1982) 是一种仅分布于中国秦岭地区的小型蝗虫。为了进一步研究其转录组特征,我们使用 Illumina HiSeq X Ten 测序平台获得了 RNA-Seq 数据。首先,转录组分析表明,两个雌性样本和一个雄性样本的转录组读数数分别为 25,043,314、24,429,905 和 25,034,457。我们组装了 65,977 条 unigenes,它们的平均长度为 1,072.09 bp,N50 长度为 2,031 bp。雌性和雄性 unigenes 的平均长度分别为 911.30 bp 和 941.82 bp,N50 长度分别为 1,745 bp 和 1,735 bp。我们使用了 8 个数据库来注释 unigenes 的功能,共获得了 23,268 个具有功能的 unigenes。此外,我们还研究了 的体色、免疫和抗药性。注释了 39 个与色素相关的基因。发现了一些免疫基因和信号通路,如 JAK-STAT 和 Toll-LIKE 受体信号通路。还有一些杀虫剂抗性基因和信号通路,如 nAChR、GST 和 DDT。此外,一些基因在雌性和雄性样本中存在差异表达,包括色素、免疫和抗药性。这项转录组研究为未来其他 Tetrigidae 物种的基因预测和分子表达研究提供了数据参考。雌雄个体的差异遗传筛选为研究昆虫的性别和免疫平衡提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea9c/10066883/a8e33439b32b/peerj-11-15123-g001.jpg

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