Bag Kingshuk, Pal Aditya Kumar, Basu Subhadip, Singla Mamta, Sarkar Biplab, Chatterji Dipankar, Maiti Prabal Kumar, Ghosh Anirban, Jayaraman Narayanaswamy
Department of Organic Chemistry, Indian Institute of Science, Bangalore 560 012, India.
Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
ACS Omega. 2023 May 31;8(23):20513-20523. doi: 10.1021/acsomega.3c00822. eCollection 2023 Jun 13.
Hyperphosphorylated nucleotide (p)ppGpp, synthesized by Rel protein, regulates the stringent response pathway responsible for biofilm and persister cell growth in mycobacteria. The discovery of vitamin C as an inhibitor of Rel protein activities raises the prospect of tetrone lactones to prevent such pathways. The closely related isotetrone lactone derivatives are identified herein as inhibitors of the above processes in a mycobacterium. Synthesis and biochemical evaluations show that an isotetrone possessing phenyl substituent at -4 inhibit the biofilm formation at 400 μg mL, 84 h post-exposure, followed by moderate inhibition by the isotetrone possessing the -hydroxyphenyl substituent. The latter isotetrone inhibits the growth of persister cells at 400 μg mL f.c. when monitored for 2 weeks, under PBS starvation. Isotetrones also potentiate the inhibition of antibiotic-tolerant regrowth of cells by ciprofloxacin (0.75 μg mL) and thus act as bioenhancers. Molecular dynamics studies show that isotetrone derivatives bind to the Rel protein more efficiently than vitamin C at a binding site possessing serine, threonine, lysine, and arginine.
由Rel蛋白合成的超磷酸化核苷酸(p)ppGpp调节负责分枝杆菌生物膜和持留菌细胞生长的应急反应途径。维生素C作为Rel蛋白活性抑制剂的发现,增加了四酮内酯预防此类途径的可能性。本文鉴定了密切相关的异四酮内酯衍生物作为分枝杆菌中上述过程的抑制剂。合成和生化评估表明,在-4位具有苯基取代基的异四酮在暴露84小时后,以400μg/mL的浓度抑制生物膜形成,其次是具有对羟基苯基取代基的异四酮产生中度抑制。在PBS饥饿条件下监测2周时,后一种异四酮以400μg/mL的终浓度抑制持留菌细胞的生长。异四酮还增强了环丙沙星(0.75μg/mL)对细胞抗生素耐受再生长的抑制作用,因此起到生物增强剂的作用。分子动力学研究表明,在具有丝氨酸、苏氨酸、赖氨酸和精氨酸的结合位点上,异四酮衍生物比维生素C更有效地结合到Rel蛋白上。