Bayly Henry, Stoddard Madison, Egeren Debra Van, Murray Eleanor J, Raifman Julia, Chakravarty Arijit, White Laura F
Boston University.
Fractal Therapeutics.
Res Sq. 2023 Jun 6:rs.3.rs-2953875. doi: 10.21203/rs.3.rs-2953875/v1.
Contact tracing forms a crucial part of the public-health toolbox in mitigating and understanding emergent pathogens and nascent disease outbreaks. Contact tracing in the United States was conducted during the pre-Omicron phase of the ongoing COVID-19 pandemic. This tracing relied on voluntary reporting and responses, often using rapid antigen tests (with a high false negative rate) due to lack of accessibility to PCR tests. These limitations, combined with SARS-CoV-2's propensity for asymptomatic transmission, raise the question "how reliable was contact tracing for COVID-19 in the United States"? We answered this question using a Markov model to examine the efficiency with which transmission could be detected based on the design and response rates of contact tracing studies in the United States. Our results suggest that contact tracing protocols in the U.S. are unlikely to have identified more than 1.65% (95% uncertainty interval: 1.62%-1.68%) of transmission events with PCR testing and 0.88% (95% uncertainty interval 0.86%-0.89%) with rapid antigen testing. When considering an optimal scenario, based on compliance rates in East Asia with PCR testing, this increases to 62.7% (95% uncertainty interval: 62.6%-62.8%). These findings highlight the limitations in interpretability for studies of SARS-CoV-2 disease spread based on U.S. contact tracing and underscore the vulnerability of the population to future disease outbreaks, for SARS-CoV-2 and other pathogens.
接触者追踪是公共卫生工具箱中的关键部分,有助于减轻和了解新出现的病原体以及新出现的疾病爆发情况。美国的接触者追踪是在正在进行的新冠疫情的奥密克戎毒株出现之前的阶段进行的。这种追踪依赖于自愿报告和回应,由于无法获得聚合酶链式反应(PCR)检测,通常使用快速抗原检测(假阴性率高)。这些限制,再加上严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的无症状传播倾向,引发了一个问题:“美国新冠疫情的接触者追踪有多可靠?”我们使用马尔可夫模型回答了这个问题,以研究根据美国接触者追踪研究的设计和回应率能够检测到传播的效率。我们的结果表明,美国的接触者追踪方案通过PCR检测不太可能识别出超过1.65%(95%不确定区间:1.62%-1.68%)的传播事件,通过快速抗原检测识别出的传播事件为0.88%(95%不确定区间0.86%-0.89%)。考虑到基于东亚PCR检测的依从率的最佳情况,这一比例会增加到62.7%(95%不确定区间:62.6%-62.8%)。这些发现凸显了基于美国接触者追踪对SARS-CoV-2疾病传播研究的可解释性方面的局限性,并强调了人群对未来SARS-CoV-2及其他病原体疾病爆发的脆弱性。