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基于端到端 RegNet 架构的基于胸部 X 光的可解释 COVID-19 检测。

Explainable COVID-19 Detection Based on Chest X-rays Using an End-to-End RegNet Architecture.

机构信息

Perception, Robotics, and Intelligent Machines (PRIME), Department of Computer Science, Université de Moncton, Moncton, NB E1A 3E9, Canada.

Montfort Academic Hospital, Institut du Savoir Montfort, Ottawa, ON 61350, Canada.

出版信息

Viruses. 2023 Jun 6;15(6):1327. doi: 10.3390/v15061327.

Abstract

COVID-19,which is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is one of the worst pandemics in recent history. The identification of patients suspected to be infected with COVID-19 is becoming crucial to reduce its spread. We aimed to validate and test a deep learning model to detect COVID-19 based on chest X-rays. The recent deep convolutional neural network (CNN) RegNetX032 was adapted for detecting COVID-19 from chest X-ray (CXR) images using polymerase chain reaction (RT-PCR) as a reference. The model was customized and trained on five datasets containing more than 15,000 CXR images (including 4148COVID-19-positive cases) and then tested on 321 images (150 COVID-19-positive) from Montfort Hospital. Twenty percent of the data from the five datasets were used as validation data for hyperparameter optimization. Each CXR image was processed by the model to detect COVID-19. Multi-binary classifications were proposed, such as: COVID-19 vs. normal, COVID-19 + pneumonia vs. normal, and pneumonia vs. normal. The performance results were based on the area under the curve (AUC), sensitivity, and specificity. In addition, an explainability model was developed that demonstrated the high performance and high generalization degree of the proposed model in detecting and highlighting the signs of the disease. The fine-tuned RegNetX032 model achieved an overall accuracy score of 96.0%, with an AUC score of 99.1%. The model showed a superior sensitivity of 98.0% in detecting signs from CXR images of COVID-19 patients, and a specificity of 93.0% in detecting healthy CXR images. A second scenario compared COVID-19 + pneumonia vs. normal (healthy X-ray) patients. The model achieved an overall score of 99.1% (AUC) with a sensitivity of 96.0% and specificity of 93.0% on the Montfort dataset. For the validation set, the model achieved an average accuracy of 98.6%, an AUC score of 98.0%, a sensitivity of 98.0%, and a specificity of 96.0% for detection (COVID-19 patients vs. healthy patients). The second scenario compared COVID-19 + pneumonia vs. normal patients. The model achieved an overall score of 98.8% (AUC) with a sensitivity of 97.0% and a specificity of 96.0%. This robust deep learning model demonstrated excellent performance in detecting COVID-19 from chest X-rays. This model could be used to automate the detection of COVID-19 and improve decision making for patient triage and isolation in hospital settings. This could also be used as a complementary aid for radiologists or clinicians when differentiating to make smart decisions.

摘要

COVID-19 是由严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)引起的,是最近历史上最严重的大流行之一。识别疑似感染 COVID-19 的患者对于减少其传播至关重要。我们旨在验证和测试一种基于胸部 X 光片检测 COVID-19 的深度学习模型。最近的深度卷积神经网络(CNN)RegNetX032 经过适应,可使用聚合酶链反应(RT-PCR)作为参考,从胸部 X 光(CXR)图像中检测 COVID-19。该模型在包含超过 15000 张 CXR 图像(包括 4148 例 COVID-19 阳性病例)的五个数据集上进行了定制和训练,然后在蒙福特医院的 321 张图像(150 例 COVID-19 阳性病例)上进行了测试。五个数据集的 20%的数据用于超参数优化的验证数据。模型处理每张 CXR 图像以检测 COVID-19。提出了多二进制分类,例如:COVID-19 与正常,COVID-19+肺炎与正常,肺炎与正常。性能结果基于曲线下面积(AUC)、敏感性和特异性。此外,还开发了一个可解释性模型,该模型证明了所提出的模型在检测和突出疾病迹象方面具有出色的性能和高度的泛化能力。经过微调的 RegNetX032 模型的整体准确率达到 96.0%,AUC 评分为 99.1%。该模型在检测 COVID-19 患者的 CXR 图像中的迹象方面表现出优越的敏感性,达到 98.0%,在检测健康 CXR 图像方面具有 93.0%的特异性。第二个场景比较了 COVID-19+肺炎与正常(健康 X 射线)患者。该模型在蒙福特数据集上的总体评分为 99.1%(AUC),具有 96.0%的敏感性和 93.0%的特异性。对于验证集,该模型的平均准确率为 98.6%,AUC 评分为 98.0%,敏感性为 98.0%,特异性为 96.0%用于检测(COVID-19 患者与健康患者)。第二个场景比较了 COVID-19+肺炎与正常患者。该模型的总体评分为 98.8%(AUC),敏感性为 97.0%,特异性为 96.0%。该强大的深度学习模型在从胸部 X 光片中检测 COVID-19 方面表现出出色的性能。该模型可用于自动检测 COVID-19,并提高医院环境中患者分诊和隔离的决策能力。当进行区分以做出明智决策时,它也可以作为放射科医生或临床医生的辅助工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10b0/10301527/722d791739fa/viruses-15-01327-g001.jpg

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