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骨转换组学:整合组学以揭示调节骨生物学和疾病的机制分子网络。

Bone Trans-omics: Integrating Omics to Unveil Mechanistic Molecular Networks Regulating Bone Biology and Disease.

机构信息

Bone Biology & Disease Laboratory, School of Biomedical Sciences, The University of Western Australia, 2nd Floor "M" Block QEII Medical Centre, Nedlands, WA, 6009, Australia.

Department of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, 6009, Australia.

出版信息

Curr Osteoporos Rep. 2023 Oct;21(5):493-502. doi: 10.1007/s11914-023-00812-8. Epub 2023 Jul 6.

Abstract

PURPOSE OF REVIEW

Recent advancements in "omics" technologies and bioinformatics have afforded researchers new tools to study bone biology in an unbiased and holistic way. The purpose of this review is to highlight recent studies integrating multi-omics data gathered from multiple molecular layers (i.e.; trans-omics) to reveal new molecular mechanisms that regulate bone biology and underpin skeletal diseases.

RECENT FINDINGS

Bone biologists have traditionally relied on single-omics technologies (genomics, transcriptomics, proteomics, and metabolomics) to profile measureable differences (both qualitative and quantitative) of individual molecular layers for biological discovery and to investigate mechanisms of disease. Recently, literature has grown on the implementation of integrative multi-omics to study bone biology, which combines computational and informatics support to connect multiple layers of data derived from individual "omic" platforms. This emerging discipline termed "trans-omics" has enabled bone biologists to identify and construct detailed molecular networks, unveiling new pathways and unexpected interactions that have advanced our mechanistic understanding of bone biology and disease. While the era of trans-omics is poised to revolutionize our capacity to answer more complex and diverse questions pertinent to bone pathobiology, it also brings new challenges that are inherent when trying to connect "Big Data" sets. A concerted effort between bone biologists and interdisciplinary scientists will undoubtedly be needed to extract physiologically and clinically meaningful data from bone trans-omics in order to advance its implementation in the field.

摘要

目的综述

“组学”技术和生物信息学的最新进展为研究人员提供了新的工具,可从无偏和整体的角度研究骨生物学。本文旨在强调最近的研究成果,这些研究将来自多个分子层面(即跨组学)的多组学数据整合起来,揭示了调控骨生物学和骨骼疾病的新分子机制。

最近的发现

骨生物学家传统上依赖于单一组学技术(基因组学、转录组学、蛋白质组学和代谢组学)来分析单个分子层的可测量差异(定性和定量),以进行生物学发现,并研究疾病机制。最近,关于整合多组学研究骨生物学的文献不断增加,它结合了计算和信息学支持,将来自单个“组学”平台的多个层面的数据连接起来。这一新兴学科称为“跨组学”,使骨生物学家能够识别和构建详细的分子网络,揭示新的途径和意想不到的相互作用,从而推进我们对骨生物学和疾病的机制理解。虽然跨组学时代有望极大地提高我们回答与骨病理生物学相关的更复杂和多样化问题的能力,但当试图连接“大数据”集时,也带来了新的挑战。骨生物学家和跨学科科学家之间的协同努力无疑将需要从骨跨组学中提取具有生理和临床意义的数据,以推进其在该领域的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68b4/10543827/c840f7129d1a/11914_2023_812_Fig1_HTML.jpg

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