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变色龙指数:用于设计口服生物利用度超越 5 规则药物的色谱变色龙定量指标

Chamelogk: A Chromatographic Chameleonicity Quantifier to Design Orally Bioavailable Beyond-Rule-of-5 Drugs.

机构信息

Molecular Biotechnology and Health Sciences Dept., CASSMedChem, University of Torino, via Quarello 15, 10135 Torino, Italy.

出版信息

J Med Chem. 2023 Aug 10;66(15):10681-10693. doi: 10.1021/acs.jmedchem.3c00823. Epub 2023 Jul 25.

Abstract

New chemical modalities in drug discovery include molecules belonging to the bRo5 chemical space. Because of their complex and flexible structure, bRo5 compounds often suffer from a poor solubility/permeability profile. Chameleonicity describes the capacity of a molecule to adapt to the environment through conformational changes; the design of molecular chameleons is a medicinal chemistry strategy simultaneously optimizing solubility and permeability. A default method to quantify chameleonicity in early drug discovery is still missing. Here we introduce Chamelogk, an automated, fast, and cheap chromatographic descriptor of chameleonicity. Moreover, we report measurements for 55 Ro5 and bRo5 compounds and validate our method with literature data. Then, selected case studies (macrocycles, nonmacrocyclic compounds, and PROTACs) are used to illustrate the application of Chamelogk in combination with lipophilicity (BRlogD) and polarity (Δ log ) descriptors. Overall, we show how Chamelogk deserves being included in property-based drug discovery strategies to design oral bioavailable bRo5 compounds.

摘要

新药研发中的新化学模式包括属于 bRo5 化学空间的分子。由于其复杂和灵活的结构,bRo5 化合物通常具有较差的溶解度/渗透性。变色龙性描述了分子通过构象变化适应环境的能力;分子变色龙的设计是一种同时优化溶解度和渗透性的药物化学策略。在早期药物发现中量化变色龙性的默认方法仍然缺失。在这里,我们引入了 Chamelogk,这是一种自动、快速且廉价的变色龙性色谱描述符。此外,我们报告了 55 个 Ro5 和 bRo5 化合物的测量值,并使用文献数据验证了我们的方法。然后,选择案例研究(大环化合物、非大环化合物和 PROTACs)来说明 Chamelogk 与脂溶性(BRlogD)和极性(Δlog)描述符结合的应用。总的来说,我们展示了 Chamelogk 如何在基于性质的药物发现策略中得到应用,以设计口服生物利用度的 bRo5 化合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b240/10424176/b66551482f77/jm3c00823_0002.jpg

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