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来自……的化学感受蛋白SnitCSP2的表达模式及配体结合特性分析

Expression Pattern and Ligand Binding Characteristics Analysis of Chemosensory Protein SnitCSP2 from .

作者信息

Guo Pingping, Hao Enhua, Li Han, Yang Xi, Lu Pengfei, Qiao Haili

机构信息

The Key Laboratory for Silviculture and Conservation of the Ministry of Education, School of Forestry, Beijing Forestry University, Beijing 100083, China.

Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China.

出版信息

Insects. 2023 Jun 27;14(7):583. doi: 10.3390/insects14070583.

Abstract

is an important wood-boring wasp to conifers native to Asia, causing considerable economic and ecological damage. However, the current control means cannot achieve better efficiency, and it is expected to clarify the molecular mechanism of protein-ligand binding for effective pest control. This study analyzed the expression pattern of CSP2 in (SnitCSP2) and its features of binding to the screened ligands using molecular docking and dynamic simulations. The results showed that SnitCSP2 was significantly expressed in female antennae. Molecular docking and dynamic simulations revealed that SnitCSP2 bound better to the host plant volatile (+)-α-pinene and symbiotic fungal volatiles terpene and (-)-globulol than other target ligands. By the molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) method, the free binding energies of the three complexes were calculated as -44.813 ± 0.189 kJ/mol, -50.446 ± 0.396 kJ/mol, and -56.418 ± 0.368 kJ/mol, and the van der Waals energy was found to contribute significantly to the stability of the complexes. Some key amino acid residues were also identified: VAL13, GLY14, LYS61, MET65, and LYS68 were important for the stable binding of (+)-α-pinene by SnitCSP2, while for terpenes, ILE16, ALA25, TYR26, CYS29, GLU39, THR37, and GLY40 were vital for a stable binding system. We identified three potential ligands and analyzed the interaction patterns of the proteins with them to provide a favorable molecular basis for regulating insect behavioral interactions and developing new pest control strategies.

摘要

是一种对亚洲本土针叶树造成严重危害的钻木黄蜂,会造成相当大的经济和生态破坏。然而,目前的防治手段效率不高,期望通过阐明蛋白质 - 配体结合的分子机制来实现有效的害虫防治。本研究分析了(SnitCSP2)中CSP2的表达模式,并使用分子对接和动力学模拟研究其与筛选出的配体的结合特性。结果表明,SnitCSP2在雌虫触角中显著表达。分子对接和动力学模拟显示,与其他目标配体相比,SnitCSP2与寄主植物挥发物(+)-α-蒎烯、共生真菌挥发物萜烯和(-)-球松素的结合更好。通过分子力学泊松 - 玻尔兹曼表面积(MM - PBSA)方法,计算出三种复合物的自由结合能分别为-44.813±0.189 kJ/mol、-50.446±0.396 kJ/mol和-56.418±0.368 kJ/mol,发现范德华能对复合物的稳定性有显著贡献。还鉴定出一些关键氨基酸残基:VAL13、GLY14、LYS61、MET65和LYS68对SnitCSP2与(+)-α-蒎烯稳定结合很重要,而对于萜烯,ILE16、ALA25、TYR26、CYS29、GLU39、THR37和GLY40对稳定结合系统至关重要。我们鉴定出三种潜在配体,并分析了蛋白质与它们的相互作用模式,为调节昆虫行为相互作用和开发新的害虫防治策略提供了有利的分子基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0961/10380366/fea25267ab55/insects-14-00583-g001.jpg

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