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在中美洲,高风险克隆株ST111产生IMP-18和/或VIM-2金属β-内酰胺酶的地方性流行情况。

Endemicity of producing IMP-18 and/or VIM-2 MBLs from the high-risk clone ST111 in Central America.

作者信息

Deshpande Lalitagauri M, Vega Silvio, Tinoco Juan Carlos, Castanheira Mariana

机构信息

JMI Laboratories, North Liberty, IA 52317, USA.

Complejo Hospitalario Metropolitano, Senacyt, Panamá.

出版信息

JAC Antimicrob Resist. 2023 Aug 1;5(4):dlad092. doi: 10.1093/jacamr/dlad092. eCollection 2023 Aug.

Abstract

BACKGROUND

is an important cause of serious nosocomial infections. Despite the overall genetic diversity of this species, highly conserved clonal complexes (CCs) have been observed among MDR isolates. Many of these CCs are associated with MBL-producing isolates.

OBJECTIVES

To evaluate five isolates from Central America that carried IMP-18- and/or VIM-2-encoding genes from the SENTRY Antimicrobial Surveillance Program (2017-2018).

METHODS

Susceptibility testing was performed by broth microdilution (CLSI). WGS was performed using MiSeq (Illumina) and MinION (Oxford Nanopore). Assembled contigs from short and long reads were combined for screening of resistance genes, MLST, core genome (cg)MLST and SNP analysis.

RESULTS

The isolates were collected in Panama and Mexico from patients with urinary tract infections or pneumonia. Isolates were categorized as XDR (CLSI/EUCAST). All isolates belonged to ST111 but carried different combinations of resistance-encoding genes. Transposon-associated MBL genes, and/or , were chromosomally located. was detected in an In integron whereas was embedded in an In-like integron. Isolates were closely related based on cgMLST (average allele distance 2-34) and SNP analysis (5-423 different SNPs).

CONCLUSIONS

MBL-producing ST111 have become endemic in Panama and may have spread to Mexico via clonal dissemination. Recombination events are apparent in the evolution of this CC. Surveillance is warranted to track the expansion and movement of this clone.

摘要

背景

是严重医院感染的重要原因。尽管该物种具有整体遗传多样性,但在多重耐药(MDR)分离株中观察到高度保守的克隆复合体(CCs)。这些CCs中的许多与产金属β-内酰胺酶(MBL)的分离株有关。

目的

评估来自中美洲的5株分离株,这些分离株携带来自哨兵抗菌监测计划(2017 - 2018年)的编码IMP - 18和/或VIM - 2的基因。

方法

采用肉汤微量稀释法(CLSI)进行药敏试验。使用MiSeq(Illumina)和MinION(Oxford Nanopore)进行全基因组测序(WGS)。将来自短读长和长读长的组装重叠群合并用于耐药基因筛选、多位点序列分型(MLST)、核心基因组(cg)MLST和单核苷酸多态性(SNP)分析。

结果

这些分离株在巴拿马和墨西哥从患有尿路感染或肺炎的患者中收集。分离株被分类为广泛耐药(XDR,CLSI/EUCAST)。所有分离株均属于ST111,但携带不同组合的耐药编码基因。与转座子相关的MBL基因,和/或,位于染色体上。在I类整合子中检测到,而嵌入在类I类整合子中。基于cgMLST(平均等位基因距离2 - 34)和SNP分析(5 - 423个不同的SNP),分离株密切相关。

结论

产MBL的ST111在巴拿马已成为地方流行株,可能通过克隆传播扩散到了墨西哥。在该克隆复合体的进化过程中重组事件明显。有必要进行监测以追踪该克隆的扩展和传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e31/10391700/d1bccbef096a/dlad092f1.jpg

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