Institute for Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Nat Struct Mol Biol. 2023 Sep;30(9):1323-1336. doi: 10.1038/s41594-023-01062-z. Epub 2023 Aug 21.
The third variable (V3) loop on the human immunodeficiency virus 1 (HIV-1) envelope glycoprotein trimer is indispensable for virus cell entry. Conformational masking of V3 within the trimer allows efficient neutralization via V3 only by rare, broadly neutralizing glycan-dependent antibodies targeting the closed prefusion trimer but not by abundant antibodies that access the V3 crown on open trimers after CD4 attachment. Here, we report on a distinct category of V3-specific inhibitors based on designed ankyrin repeat protein (DARPin) technology that reinstitute the CD4-bound state as a key neutralization target with up to >90% breadth. Broadly neutralizing DARPins (bnDs) bound V3 solely on open envelope and recognized a four-turn amphipathic α-helix in the carboxy-terminal half of V3 (amino acids 314-324), which we termed 'αV3C'. The bnD contact surface on αV3C was as conserved as the CD4 binding site. Molecular dynamics and escape mutation analyses underscored the functional relevance of αV3C, highlighting the potential of αV3C-based inhibitors and, more generally, of postattachment inhibition of HIV-1.
人类免疫缺陷病毒 1 (HIV-1) 包膜糖蛋白三聚体上的第三个可变环 (V3) 对于病毒进入细胞是不可或缺的。V3 在三聚体中的构象掩蔽允许通过罕见的、广泛中和的糖基依赖性抗体仅通过 V3 有效地进行中和,这些抗体针对封闭的预融合三聚体,但不能通过大量的抗体来实现,这些抗体在 CD4 结合后进入开放三聚体的 V3 冠部。在这里,我们报告了一种基于设计的锚蛋白重复蛋白 (DARPin) 技术的独特的 V3 特异性抑制剂类别,该技术将 CD4 结合状态重新作为关键的中和靶标,其广度可达 >90%。广泛中和的 DARPin(bnD)仅在开放包膜上结合 V3,并识别 V3 羧基末端半部分(氨基酸 314-324)的四转角两亲性α-螺旋,我们将其命名为“αV3C”。αV3C 上的 bnD 接触表面与 CD4 结合位点一样保守。分子动力学和逃逸突变分析强调了 αV3C 的功能相关性,突出了基于 αV3C 的抑制剂的潜力,更广泛地说,突出了 HIV-1 后附着抑制的潜力。