Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
College of Grassland Science, Qingdao Agricultural University, Qingdao 266109, China.
Int J Mol Sci. 2023 Aug 11;24(16):12683. doi: 10.3390/ijms241612683.
Heat shock transcription factors (HSFs) are important regulatory factors in plant stress responses to various biotic and abiotic stresses and play important roles in growth and development. The gene family has been systematically identified and analyzed in many plants but it is not in the tetraploid alfalfa genome. We detected 104 genes (s) in the tetraploid alfalfa genome ("Xinjiangdaye" reference genome) and classified them into three subgroups: 68 in HSFA, 35 in HSFB and 1 in HSFC subgroups. Basic bioinformatics analysis, including genome location, protein sequence length, protein molecular weight and conserved motif identification, was conducted. Gene expression analysis revealed tissue-specific expression for 13 s and tissue-wide expression for 28 s. Based on transcriptomic data analysis, 21, 11 and 27 s responded to drought stress, cold stress and salt stress, respectively, with seven responding to all three. According to RT-PCR, / expression gradually increased with cold, salt and drought stress condition duration; expression increased over time under salt and drought stress conditions but decreased under cold stress. Our results provide key information for further functional analysis of s and for genetic improvement of stress resistance in alfalfa.
热休克转录因子(HSFs)是植物应对各种生物和非生物胁迫的应激反应中的重要调控因子,在生长和发育中发挥重要作用。该基因家族在许多植物中已被系统地鉴定和分析,但在四倍体苜蓿基因组中尚未发现。我们在四倍体苜蓿基因组(“新疆大叶”参考基因组)中检测到 104 个基因(s),并将它们分为三个亚组:68 个在 HSFA 中,35 个在 HSFB 中,1 个在 HSFC 中。进行了基本的生物信息学分析,包括基因组位置、蛋白质序列长度、蛋白质分子量和保守基序鉴定。基因表达分析显示 13 个 s 具有组织特异性表达,28 个 s 具有组织广泛表达。基于转录组数据分析,21、11 和 27 个 s 分别对干旱、冷和盐胁迫有反应,其中 7 个 s 对所有三种胁迫都有反应。根据 RT-PCR,/的表达随着冷、盐和干旱胁迫条件持续时间的增加而逐渐增加;在盐和干旱胁迫条件下,表达随时间增加,但在冷胁迫下表达减少。我们的研究结果为进一步分析 s 的功能以及提高苜蓿的抗逆性遗传改良提供了关键信息。