Yanshole Vadim V, Melnikov Arsenty D, Yanshole Lyudmila V, Zelentsova Ekaterina A, Snytnikova Olga A, Osik Nataliya A, Fomenko Maxim V, Savina Ekaterina D, Kalinina Anastasia V, Sharshov Kirill A, Dubovitskiy Nikita A, Kobtsev Mikhail S, Zaikovskii Anatolii A, Mariasina Sofia S, Tsentalovich Yuri P
Laboratory of Proteomics and Metabolomics, International Tomography Center SB RAS, Institutskaya Str. 3a, Novosibirsk 630090, Russia.
Department of Physics, Novosibirsk State University, Pirogova Str. 1, Novosibirsk 630090, Russia.
Metabolites. 2023 Oct 17;13(10):1088. doi: 10.3390/metabo13101088.
The Animal Metabolite Database (AMDB, https://amdb.online) is a freely accessible database with built-in statistical analysis tools, allowing one to browse and compare quantitative metabolomics data and raw NMR and MS data, as well as sample metadata, with a focus on the metabolite concentrations rather than on the raw data itself. AMDB also functions as a platform for the metabolomics community, providing convenient deposition and exchange of quantitative metabolomic data. To date, the majority of the data in AMDB relate to the metabolite content of the eye lens and blood of vertebrates, primarily wild species from Siberia, Russia and laboratory rodents. However, data on other tissues (muscle, heart, liver, brain, and more) are also present, and the list of species and tissues is constantly growing. Typically, every sample in AMDB contains concentrations of 60-90 of the most abundant metabolites, provided in nanomoles per gram of wet tissue weight (nmol/g). We believe that AMDB will become a widely used tool in the community, as typical metabolite baseline concentrations in tissues of animal models will aid in a wide variety of fundamental and applied scientific fields, including, but not limited to, animal modeling of human diseases, assessment of medical formulations, and evolutionary and environmental studies.
动物代谢物数据库(AMDB,https://amdb.online)是一个可免费访问的数据库,带有内置统计分析工具,允许用户浏览和比较定量代谢组学数据、原始核磁共振(NMR)和质谱(MS)数据以及样本元数据,重点是代谢物浓度而非原始数据本身。AMDB还作为代谢组学社区的一个平台,为定量代谢组学数据提供便捷的存储和交换。到目前为止,AMDB中的大多数数据与脊椎动物的晶状体和血液中的代谢物含量有关,主要是来自俄罗斯西伯利亚的野生物种和实验室啮齿动物。然而,关于其他组织(肌肉、心脏、肝脏、大脑等)的数据也有,并且物种和组织的列表在不断增加。通常,AMDB中的每个样本都包含60 - 90种最丰富代谢物的浓度,以每克湿组织重量的纳摩尔数(nmol/g)表示。我们相信AMDB将成为该领域广泛使用的工具,因为动物模型组织中的典型代谢物基线浓度将有助于广泛的基础和应用科学领域,包括但不限于人类疾病的动物建模、药物制剂评估以及进化和环境研究。