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进化“众包”:适应度景观的对齐允许水平转移基因的跨物种适应。

Evolutionary "Crowdsourcing": Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene.

机构信息

Biology Department, University of Washington, Seattle, WA 98195, USA.

BEACON Center for the Study of Evolution in Action, East Lansing, MI 48824, USA.

出版信息

Mol Biol Evol. 2023 Nov 3;40(11). doi: 10.1093/molbev/msad237.

Abstract

Genes that undergo horizontal gene transfer (HGT) evolve in different genomic backgrounds. Despite the ubiquity of cross-species HGT, the effects of switching hosts on gene evolution remains understudied. Here, we present a framework to examine the evolutionary consequences of host-switching and apply this framework to an antibiotic resistance gene commonly found on conjugative plasmids. Specifically, we determined the adaptive landscape of this gene for a small set of mutationally connected genotypes in 3 enteric species. We uncovered that the landscape topographies were largely aligned with minimal host-dependent mutational effects. By simulating gene evolution over the experimentally gauged landscapes, we found that the adaptive evolution of the mobile gene in one species translated to adaptation in another. By simulating gene evolution over artificial landscapes, we found that sufficient alignment between landscapes ensures such "adaptive equivalency" across species. Thus, given adequate landscape alignment within a bacterial community, vehicles of HGT such as plasmids may enable a distributed form of genetic evolution across community members, where species can "crowdsource" adaptation.

摘要

发生水平基因转移(HGT)的基因在不同的基因组背景下进化。尽管跨物种 HGT 无处不在,但宿主转换对基因进化的影响仍研究不足。在这里,我们提出了一个框架来检验宿主转换的进化后果,并将该框架应用于一种常见于可移动质粒上的抗生素抗性基因。具体来说,我们在 3 种肠杆菌物种中确定了一组小的突变连接基因型的基因的适应景观。我们发现,这些地形的地形与最小的宿主依赖的突变效应基本一致。通过在实验测定的景观上模拟基因进化,我们发现一个物种中移动基因的适应性进化转化为另一个物种的适应性进化。通过在人工景观上模拟基因进化,我们发现景观之间有足够的一致性可以确保物种之间的“适应性等价性”。因此,在细菌群落中存在足够的景观一致性的情况下,像质粒这样的 HGT 载体可以在群落成员之间实现分布式遗传进化,从而使物种能够“众包”适应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d4c/10657783/c5afd4d3bca2/msad237f1.jpg

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