Museum of Comparative Zoology and Department of Organismic & Evolutionary Biology, Harvard University, 26 Oxford St, Cambridge, MA 02138, USA.
Institute of Environment and Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami, FL 33181, USA.
Syst Biol. 2024 Jul 27;73(2):247-262. doi: 10.1093/sysbio/syad066.
For much of terrestrial biodiversity, the evolutionary pathways of adaptation from marine ancestors are poorly understood and have usually been viewed as a binary trait. True crabs, the decapod crustacean infraorder Brachyura, comprise over 7600 species representing a striking diversity of morphology and ecology, including repeated adaptation to non-marine habitats. Here, we reconstruct the evolutionary history of Brachyura using new and published sequences of 10 genes for 344 tips spanning 88 of 109 brachyuran families. Using 36 newly vetted fossil calibrations, we infer that brachyurans most likely diverged in the Triassic, with family-level splits in the late Cretaceous and early Paleogene. By contrast, the root age is underestimated with automated sampling of 328 fossil occurrences explicitly incorporated into the tree prior, suggesting such models are a poor fit under heterogeneous fossil preservation. We apply recently defined trait-by-environment associations to classify a gradient of transitions from marine to terrestrial lifestyles. We estimate that crabs left the marine environment at least 7 and up to 17 times convergently, and returned to the sea from non-marine environments at least twice. Although the most highly terrestrial- and many freshwater-adapted crabs are concentrated in Thoracotremata, Bayesian threshold models of ancestral state reconstruction fail to identify shifts to higher terrestrial grades due to the degree of underlying change required. Lineages throughout our tree inhabit intertidal and marginal marine environments, corroborating the inference that the early stages of terrestrial adaptation have a lower threshold to evolve. Our framework and extensive new fossil and natural history datasets will enable future comparisons of non-marine adaptation at the morphological and molecular level. Crabs provide an important window into the early processes of adaptation to novel environments, and different degrees of evolutionary constraint that might help predict these pathways. [Brachyura; convergent evolution; crustaceans; divergence times; fossil calibration; molecular phylogeny; terrestrialization; threshold model.].
对于大多数陆地生物多样性而言,从海洋祖先适应的进化途径还知之甚少,通常被视为二元特征。真正的螃蟹,十足目甲壳动物短尾下目,包括超过 7600 种,代表了惊人的形态和生态多样性,包括反复适应非海洋生境。在这里,我们使用新的和已发表的 10 个基因序列对 Brachyura 的进化历史进行了重建,这些序列来自 344 个样本,涵盖了 109 个十足目家族中的 88 个。利用 36 个新验证的化石校准点,我们推断出 Brachyura 最有可能在三叠纪分化,家族级别的分裂发生在白垩纪晚期和古近纪早期。相比之下,当将明确纳入树先验的 328 个化石点的自动采样纳入到模型中时,根年龄被低估了,这表明在化石保存存在异质性的情况下,此类模型拟合效果不佳。我们应用最近定义的性状-环境关联来对从海洋到陆地生活方式的渐变进行分类。我们估计螃蟹至少有 7 次和多达 17 次从海洋环境中趋同演化,并且至少有 2 次从非海洋环境中返回海洋。尽管最适应陆地和许多适应淡水的螃蟹集中在 Thoracotremata 中,但由于所需的基础变化程度,贝叶斯阈值祖先状态重建模型无法识别向更高陆地等级的转变。我们树中的谱系栖息在潮间带和边缘海洋环境中,这证实了这样的推断,即陆地适应的早期阶段进化的门槛较低。我们的框架和广泛的新化石和自然历史数据集将使未来能够在形态和分子水平上比较非海洋适应。螃蟹为适应新环境的早期过程以及可能有助于预测这些途径的不同程度的进化约束提供了重要窗口。[短尾下目;趋同进化;甲壳动物;分歧时间;化石校准;分子系统发育;陆地化;阈值模型。]