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血清外泌体 miRNA 作为早发型成人眼肌型重症肌无力生物标志物的研究。

Study of serum exosome miRNA as a biomarker for early onset adult ouclar myastthenia gravis.

机构信息

Department of Ophthalmology, The First Affiliated Hospital of Jinan University, Guangzhou, China.

Department of Neurology, The First Affiliated Hospital of Sun Yat sen University, Guangzhou, China.

出版信息

Gene. 2024 Feb 20;896:148034. doi: 10.1016/j.gene.2023.148034. Epub 2023 Nov 25.

Abstract

BACKGROUND

By extracting and sequencing miRNAs from serum exosomes of patients with early-onset ocular myasthenia gravis (OMG), generalized myasthenia gravis (GMG) and healthy controls, we screened differentially expressed miRNAs and explored the possibility as potential biomarkers for early-onset OMG.

METHODS

Peripheral blood samples were collected from patients with early-onset OMG, early-onset GMG, and age-matched healthy subjects, with 6 samples in each group. All these patients were diagnosed as MG for the first time and did not undergo any treatment. Exosomes miRNAs were extracted from the serum and performed deep sequencing; the differentially expressed miRNAs were compared and analyzed between OMG, GMG, and healthy control groups using edgeR. The differential expression standard was set to | log2FC |>1, p < 0.05. Target prediction of mRNAs were performed using miRTarBase, TargetScan, and miRDB databases, and a protein-protein interaction (PPI) network was constructed subsequently. The miRNAs with a significant difference were validated using RT-qPCR (10 early-onset OMG patients, 10 early-onset GMG patients and 10 age-sex-matched healthy subjects), and the value of the area under the ROC curve (AUC) was used to assess the diagnostic accuracy and evaluate clinical prognostic value.

RESULTS

In total, one upregulated (miR-130a-3p) miRNA was obtained through the upregulated intersection between control vs OMG and OMG vs GMG; four downregulated (miR-4712-3p; miR-6752-5p; miR-320d; miR-3614-3p) miRNAs were obtained through the downregulated intersection between control vs OMG and OMG vs GMG. A total of 408 target genes were predicted for the five differentially expressed miRNAs. The mTOR signaling pathway and Rap1 signaling pathway were significantly enriched based on the enrichment results. RT-qPCR findings revealed that for the OMG, the expression of miR-320d, miR-4712-3p and miR-3614-3p was markedly up-/down-regulated as compared to GMG and healthy control group. The AUC for the three miRNAs between OMG and healthy control groups were 0.78, 0.79 and 0.79 respectively; the AUC between OMG and GMG was 0.84.

CONCLUSIONS

The present study identified three novel miRNAs as candidate biomarkers for early-onset OMG patients and it was expected to provide a possibility and a new orientation for serum exosomal miRNAs as OMG diagnostic biomarkers.

摘要

背景

通过从早发性眼肌型重症肌无力(OMG)、全身性重症肌无力(GMG)患者和健康对照者的血清外泌体中提取和测序 miRNAs,我们筛选了差异表达的 miRNAs,并探讨了其作为早发性 OMG 潜在生物标志物的可能性。

方法

收集了 6 例早发性 OMG、早发性 GMG 和年龄匹配的健康对照组患者的外周血样本。所有这些患者均首次诊断为 MG,且未接受任何治疗。从血清中提取外泌体 miRNAs 并进行深度测序;使用 edgeR 比较 OMG、GMG 和健康对照组之间差异表达的 miRNAs。差异表达标准设置为|log2FC|>1,p<0.05。使用 miRTarBase、TargetScan 和 miRDB 数据库进行 mRNAs 的靶标预测,随后构建蛋白质-蛋白质相互作用(PPI)网络。使用 RT-qPCR(10 例早发性 OMG 患者、10 例早发性 GMG 患者和 10 例年龄和性别匹配的健康受试者)验证差异表达的 miRNAs,使用 ROC 曲线下面积(AUC)值评估诊断准确性和评估临床预后价值。

结果

总共获得了一个上调的 miRNA(miR-130a-3p),通过对照与 OMG 以及 OMG 与 GMG 之间的上调交集获得;通过对照与 OMG 以及 OMG 与 GMG 之间的下调交集获得了四个下调的 miRNA(miR-4712-3p;miR-6752-5p;miR-320d;miR-3614-3p)。五个差异表达的 miRNA 共预测了 408 个靶基因。根据富集结果,mTOR 信号通路和 Rap1 信号通路显著富集。RT-qPCR 结果显示,与 GMG 和健康对照组相比,OMG 中 miR-320d、miR-4712-3p 和 miR-3614-3p 的表达明显上调/下调。OMG 与健康对照组之间三个 miRNA 的 AUC 分别为 0.78、0.79 和 0.79;OMG 与 GMG 之间的 AUC 为 0.84。

结论

本研究鉴定了三个新的 miRNA 作为早发性 OMG 患者的候选生物标志物,有望为血清外泌体 miRNAs 作为 OMG 诊断生物标志物提供可能性和新方向。

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