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全基因组鉴定和生物胁迫下花生(Arachis hypogaea)GASA 基因家族的综合分析。

Genome-Wide Identification and Comprehensive Analysis of the GASA Gene Family in Peanuts ( L.) under Abiotic Stress.

机构信息

Department of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang 50424, Republic of Korea.

Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.

出版信息

Int J Mol Sci. 2023 Dec 4;24(23):17117. doi: 10.3390/ijms242317117.

Abstract

Peanut ( L.) is a globally cultivated crop of significant economic and nutritional importance. The role of gibberellic-acid-stimulated Arabidopsis (GASA) family genes is well established in plant growth, development, and biotic and abiotic stress responses. However, there is a gap in understanding the function of GASA proteins in cultivated peanuts, particularly in response to abiotic stresses such as drought and salinity. Thus, we conducted comprehensive in silico analyses to identify and verify the existence of 40 GASA genes (termed ) in cultivated peanuts. Subsequently, we conducted biological experiments and performed expression analyses of selected genes to elucidate their potential regulatory roles in response to drought and salinity. Phylogenetic analysis revealed that genes could be categorized into four distinct subfamilies. Under normal growth conditions, selected genes exhibited varying expressions in young peanut seedling leaves, stems, and roots tissues. Notably, our findings indicate that certain genes were downregulated under drought stress but upregulated under salt stress. These results suggest that specific genes are involved in the regulation of salt or drought stress. Further functional characterization of the upregulated genes under both drought and salt stress will be essential to confirm their regulatory roles in this context. Overall, our findings provide compelling evidence of the involvement of genes in the mechanisms of stress tolerance in cultivated peanuts. This study enhances our understanding of the functions of genes in response to abiotic stress and lays the groundwork for future investigations into the molecular characterization of genes.

摘要

花生(Arachis hypogaea L.)是一种具有重要经济和营养价值的全球性种植作物。赤霉素刺激的拟南芥(Arabidopsis)(GASA)家族基因在植物生长、发育以及生物和非生物胁迫响应中的作用已得到充分证实。然而,对于栽培花生中 GASA 蛋白的功能,特别是在应对干旱和盐胁迫等非生物胁迫方面,我们的理解还存在空白。因此,我们进行了全面的计算机分析,以鉴定和验证栽培花生中存在的 40 个 GASA 基因(称为 )。随后,我们进行了生物学实验,并对选定的 基因进行了表达分析,以阐明它们在应对干旱和盐胁迫中的潜在调节作用。系统发育分析表明, 基因可分为四个不同的亚家族。在正常生长条件下,选定的 基因在花生幼苗叶片、茎和根组织中表现出不同的表达模式。值得注意的是,我们的研究结果表明,某些 基因在干旱胁迫下下调,但在盐胁迫下上调。这些结果表明,特定的 基因参与了盐或干旱胁迫的调节。进一步对干旱和盐胁迫下上调基因的功能特征进行研究,对于确认它们在这方面的调节作用至关重要。总的来说,我们的研究结果提供了确凿的证据,证明 基因参与了栽培花生的胁迫耐受机制。本研究增进了我们对 基因在应对非生物胁迫中的功能的理解,为进一步研究 基因的分子特征奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4aed/10707693/870954ce187b/ijms-24-17117-g001.jpg

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