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从头算研究氰基膦与次卤酸相互作用产生的氮族元素、卤素和氢键的竞争。

Ab initio investigation of the competition of pnicogen, halogen, and hydrogen bonds resulting from the interactions between cyanophosphine and hypohalous acids.

作者信息

Moradkhani Mohammadmehdi, Naghipour Ali, Tyula Yunes Abbasi

机构信息

Department of Chemistry, Faculty of Science, Ilam University, Ilam, 69315-516, Iran.

出版信息

J Mol Model. 2023 Dec 28;30(1):15. doi: 10.1007/s00894-023-05809-9.

Abstract

CONTEXT

The complexes formed as a result of the interactions between cyanophosphine (CP, HPCN) and hypohalous acid molecules (HOX, X = F, Cl, Br, and I) were studied by employing ab initio computations conducted at the MP2/aug-cc-pVTZ level. Three types of complexes were acquired (I, II, and III) as a result of the (O∙∙∙P) pnicogen bond, the (N∙∙∙H) hydrogen bond, and the (N∙∙∙X) halogen bond interaction, respectively. The results of harmonic vibrational frequency calculations with no imaginary frequencies confirmed the structures as minima. In addition, given the interaction energy of the complexes, hydrogen bond complexes of structure II have the highest stability compared to other structures. In all studied complexes, the strength of the interactions depended on the electronegativity of the halogen atoms. The characteristics and nature of the whole three types of complexes were examined and evaluated with natural bond orbital (NBO), atom in molecules (AIM), molecular electrostatic potential (MEP) maps, non-covalent interaction (NCI) index, and electron density difference (EDD) analyses.

METHOD

The optimization of all complexes and corresponding monomers was conducted through the ab initio method, employing the MP2 level along with the aug/cc-pVTZ basis set for all atoms, except for the iodine (I) atom, for which the aug-cc-pVTZ (PP) basis set was employed. Subsequent frequency calculations were executed to ascertain the minimum energy state of the complexes at the MP2 level and the aug/cc-pVTZ basis set, utilizing Gaussian09 software. The MEP maps of the monomers were generated using the analysis-surface suite (WFA-SAS) software package. To probe the orbital interactions within the studied complexes, NBO analysis was performed employing NBO software. The assessment of bond nature, topological features, and electron density values at critical points for the studied complexes was undertaken using AIMAll software. The NCI index was derived utilizing Multiwfn software, and its three-dimensional representation was rendered using VMD software.

摘要

背景

通过在MP2/aug-cc-pVTZ水平上进行的从头算计算,研究了氰基膦(CP,HPCN)与次卤酸分子(HOX,X = F、Cl、Br和I)之间相互作用形成的配合物。由于分别存在(O∙∙∙P)氮族元素键、(N∙∙∙H)氢键和(N∙∙∙X)卤键相互作用,获得了三种类型的配合物(I、II和III)。无虚频的简谐振动频率计算结果证实这些结构为极小值。此外,考虑到配合物的相互作用能与其他结构相比,结构II的氢键配合物具有最高的稳定性。在所有研究的配合物中,相互作用的强度取决于卤原子的电负性。使用自然键轨道(NBO)、分子中的原子(AIM)、分子静电势(MEP)图、非共价相互作用(NCI)指数和电子密度差(EDD)分析对所有三种类型配合物的特征和性质进行了研究和评估。

方法

所有配合物及其相应单体的优化均通过从头算方法进行,除碘(I)原子采用aug-cc-pVTZ(PP)基组外,所有原子均采用MP2水平和aug/cc-pVTZ基组。随后进行频率计算,以利用Gaussian09软件确定配合物在MP2水平和aug/cc-pVTZ基组下的最低能量状态。使用分析表面套件(WFA-SAS)软件包生成单体的MEP图。为探究所研究配合物中的轨道相互作用,使用NBO软件进行NBO分析。使用AIMAll软件对所研究配合物的键性质、拓扑特征和临界点处的电子密度值进行评估。利用Multiwfn软件导出NCI指数,并使用VMD软件生成其三维表示。

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