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人巨细胞病毒主要早期即刻转录物 5'非翻译区中的特定 RNA 结构对于病毒的有效复制至关重要。

Specific RNA structures in the 5' untranslated region of the human cytomegalovirus major immediate early transcript are critical for efficient virus replication.

机构信息

Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.

出版信息

mBio. 2024 Feb 14;15(2):e0262123. doi: 10.1128/mbio.02621-23. Epub 2024 Jan 2.

Abstract

Human cytomegalovirus (HCMV) requires the robust expression of two immediate early proteins, IE1 and IE2, immediately upon infection to suppress the antiviral response and promote viral gene expression. While transcriptional control of IE1 and IE2 has been extensively studied, the role of post-transcriptional regulation of IE1 and IE2 expression is relatively unexplored. We previously found that the shared major immediate early 5' untranslated region (MIE 5' UTR) of the mature IE1 and IE2 transcripts plays a critical role in facilitating the translation of the IE1 and IE2 mRNAs. As RNA secondary structure in 5' UTRs can regulate mRNA translation efficiency, we used selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) to identify RNA structures in the shared MIE 5' UTR. We found that the MIE 5' UTR contains three stable stem loop structures. Using a series of recombinant viruses to investigate the role of each stem loop in IE1 and IE2 protein synthesis, we found that the stem loop closest to the 5' end of the MIE 5' UTR (SL1) is both necessary and sufficient for efficient IE1 and IE2 mRNA translation and HCMV replication. The positive effect of SL1 on mRNA translation and virus replication was dependent on its location within the 5' UTR. Surprisingly, a synthetic stem loop with the same free energy as SL1 in its native location also supported wild type levels of IE1 and IE2 mRNA translation and virus replication, suggesting that the presence of RNA structure at a specific location in the 5' UTR, rather than the primary sequence of the RNA, is critical for efficient IE1 and IE2 protein synthesis. These data reveal a novel post-transcriptional regulatory mechanism controlling IE1 and IE2 expression and reinforce the critical role of RNA structure in regulating HCMV protein synthesis and replication.IMPORTANCEThese results reveal a new aspect of immediate early gene regulation controlled by non-coding RNA structures in viral mRNAs. Previous studies have largely focused on understanding viral gene expression at the level of transcriptional control. Our results show that a complete understanding of the control of viral gene expression must include an understanding of viral mRNA translation, which is driven in part by RNA structure(s) in the 5' UTR of viral mRNAs. Our results illustrate the importance of these additional layers of regulation by defining specific 5' UTR RNA structures regulating immediate early gene expression in the context of infection and identify important features of RNA structure that govern viral mRNA translation efficiency. These results may therefore broadly impact current thinking on how viral gene expression is regulated for human cytomegalovirus and other DNA viruses.

摘要

人巨细胞病毒(HCMV)需要立即早期蛋白 IE1 和 IE2 的强烈表达,以在感染后立即抑制抗病毒反应并促进病毒基因表达。虽然已经对 IE1 和 IE2 的转录控制进行了广泛研究,但 IE1 和 IE2 表达的转录后调控作用相对未知。我们之前发现,成熟 IE1 和 IE2 转录物共享的主要即刻早期 5' 非翻译区(MIE 5' UTR)在促进 IE1 和 IE2 mRNA 的翻译中起着关键作用。由于 5' UTR 中的 RNA 二级结构可以调节 mRNA 翻译效率,我们使用选择性 2'-羟乙酰化分析引物延伸和突变分析(SHAPE-MaP)来鉴定共享 MIE 5' UTR 中的 RNA 结构。我们发现 MIE 5' UTR 包含三个稳定的茎环结构。使用一系列重组病毒来研究每个茎环在 IE1 和 IE2 蛋白合成中的作用,我们发现 MIE 5' UTR 中最靠近 5' 端的茎环(SL1)对于高效的 IE1 和 IE2 mRNA 翻译和 HCMV 复制都是必需且足够的。SL1 对 mRNA 翻译和病毒复制的正效应依赖于其在 5' UTR 中的位置。令人惊讶的是,具有与 SL1 相同自由能的合成茎环也支持野生型 IE1 和 IE2 mRNA 翻译和病毒复制水平,这表明 RNA 结构在 5' UTR 中的特定位置的存在而不是 RNA 的一级序列对于高效的 IE1 和 IE2 蛋白合成至关重要。这些数据揭示了一种新的转录后调节机制,控制 IE1 和 IE2 的表达,并强调了 RNA 结构在调节 HCMV 蛋白合成和复制中的关键作用。

重要性

这些结果揭示了病毒 mRNA 中非编码 RNA 结构控制即刻早期基因调节的一个新方面。以前的研究主要集中在理解转录控制水平的病毒基因表达上。我们的结果表明,对病毒基因表达的全面理解必须包括对病毒 mRNA 翻译的理解,而病毒 mRNA 翻译部分是由病毒 mRNA 5' UTR 中的 RNA 结构驱动的。我们的结果说明了这些额外调节层的重要性,这些调节层通过定义在感染背景下调节即刻早期基因表达的特定 5' UTR RNA 结构,并确定了控制病毒 mRNA 翻译效率的 RNA 结构的重要特征。因此,这些结果可能会广泛影响当前对人类巨细胞病毒和其他 DNA 病毒的基因表达调控方式的思考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bff/10865803/57663b6e0f80/mbio.02621-23.f001.jpg

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