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(菊科,刺苞菊属)叶绿体全基因组的特征分析与系统发育分析

Characterization and phylogenetic analysis of the complete chloroplast genome of (Asteraceae, Cardueae).

作者信息

Liu Xiao-Feng, Luo Jun-Jia, Li Ting-Yu, Chen Hui, Liu Jia-Yu, Li Bo, Dou Liang, Fu Zhi-Xi

机构信息

Key Laboratory of Land Resources Evaluation and Monitoring in Southwest, Sichuan Normal University, Ministry of Education, Chengdu, China.

College of Life Sciences, Sichuan Normal University, Chengdu, China.

出版信息

Mitochondrial DNA B Resour. 2023 Nov 17;8(11):1268-1272. doi: 10.1080/23802359.2023.2281704. eCollection 2023.

Abstract

The species of Y. S. Chen & S. R. Yi belongs to the family Asteraceae (Cardueae). The complete chloroplast genome of was assembled and annotated for the first time in this study. The complete chloroplast genome of was 152,535 bp, including a large single-copy (LSC) region of 83,511 bp, a small single-copy (SSC) region of 18,632 bp, and a pair of inverted repeats (IRs) of 25,196 bp. The overall GC content of the chloroplast genome was 37.7%. The chloroplast genome encoded 131 genes, including 87 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on complete chloroplast sequences revealed that it related closely to .

摘要

陈艺林和易思荣所定的物种属于菊科(菜蓟族)。本研究首次对其完整叶绿体基因组进行了组装和注释。其完整叶绿体基因组为152,535 bp,包括一个83,511 bp的大单拷贝(LSC)区域、一个18,632 bp的小单拷贝(SSC)区域以及一对25,196 bp的反向重复序列(IR)。叶绿体基因组的总体GC含量为37.7%。叶绿体基因组编码131个基因,包括87个蛋白质编码基因、36个tRNA基因和8个rRNA基因。基于完整叶绿体序列的系统发育分析表明,它与 关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbfc/10769533/f007b708baec/TMDN_A_2281704_F0001_C.jpg

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