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结合双机器学习筛选和片段取代优化方法、分子对接和动态模拟方法开发新型ALOX15抑制剂。

Development of novel ALOX15 inhibitors combining dual machine learning filtering and fragment substitution optimisation approaches, molecular docking and dynamic simulation methods.

作者信息

Liao Yinglin, Cao Peng, Luo Lianxiang

机构信息

The First Clinical College, Guangdong Medical University, Zhanjiang, China.

Department of Pharmacy, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

J Enzyme Inhib Med Chem. 2024 Dec;39(1):2301756. doi: 10.1080/14756366.2024.2301756. Epub 2024 Jan 12.

Abstract

The oxidation of unsaturated lipids, facilitated by the enzyme Arachidonic acid 15-lipoxygenase (ALOX15), is an essential element in the development of ferroptosis. This study combined a dual-score exclusion strategy with high-throughput virtual screening, naive Bayesian and recursive partitioning machine learning models, the already established ALOX15 inhibitor i472, and a docking-based fragment substitution optimisation approach to identify potential ALOX15 inhibitors, ultimately leading to the discovery of three FDA-approved drugs that demonstrate optimal inhibitory potential against ALOX15. Through fragment substitution-based optimisation, seven new inhibitor structures have been developed. To evaluate their practicality, ADMET predictions and molecular dynamics simulations were performed. In conclusion, the compounds found in this study provide a novel approach to combat conditions related to ferroptosis-related injury by inhibiting ALOX15.

摘要

由花生四烯酸15-脂氧合酶(ALOX15)促进的不饱和脂质氧化是铁死亡发展中的一个关键因素。本研究将双评分排除策略与高通量虚拟筛选、朴素贝叶斯和递归划分机器学习模型、已有的ALOX15抑制剂i472以及基于对接的片段取代优化方法相结合,以识别潜在的ALOX15抑制剂,最终发现了三种FDA批准的药物,它们对ALOX15具有最佳抑制潜力。通过基于片段取代的优化,开发了七种新的抑制剂结构。为评估其实用性,进行了ADMET预测和分子动力学模拟。总之,本研究中发现的化合物为通过抑制ALOX15来对抗与铁死亡相关损伤的病症提供了一种新方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c299/10791093/c481c2146861/IENZ_A_2301756_F0001_C.jpg

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