Suppr超能文献

InBIO条形码计划数据库:伊比利亚毛翅目昆虫的DNA条形码,记录地中海热点地区淡水生物监测的生物多样性。

The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot.

作者信息

Pauperio Joana, Gonzalez Luis Martin, Martinez Jesus, González Marcos A, Martins Filipa Ms, Veríssimo Joana, Puppo Pamela, Pinto Joana, Chaves Cátia, Pinho Catarina J, Grosso-Silva José Manuel, Quaglietta Lorenzo, Silva Teresa Luísa L, Sousa Pedro, Alves Paulo Celio, Fonseca Nuno, Beja Pedro, Ferreira Sónia

机构信息

BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Vila do Conde, Portugal BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão Vila do Conde Portugal.

European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom European Molecular Biology Laboratory, European Bioinformatics Institute Hinxton, Cambridge United Kingdom.

出版信息

Biodivers Data J. 2023 Jan 19;11:e97484. doi: 10.3897/BDJ.11.e97484. eCollection 2023.

Abstract

BACKGROUND

The Trichoptera are an important component of freshwater ecosystems. In the Iberian Peninsula, 380 taxa of caddisflies are known, with nearly 1/3 of the total species being endemic in the region. A reference collection of morphologically identified Trichoptera specimens, representing 142 Iberian taxa, was constructed. The InBIO Barcoding Initiative (IBI) Trichoptera 01 dataset contains records of 438 sequenced specimens. The species of this dataset correspond to about 37% of Iberian Trichoptera species diversity. Specimens were collected between 1975 and 2018 and are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources, Portugal) or in the collection Marcos A. González at the University of Santiago de Compostela (Spain).

NEW INFORMATION

Twenty-nine species, from nine different families, were new additions to the Barcode of Life Data System (BOLD). A success identification rate of over 80% was achieved when comparing morphological identifications and DNA barcodes for the species analysed. This encouraging step advances incorporation of informed Environmental DNA tools in biomonitoring schemes, given the shortcomings of morphological identifications of larvae and adult Caddisflies in such studies. DNA barcoding was not successful in identifying species in six Trichoptera genera: (Hydropsychidae), (Leptoceridae), (Philopotamidae), (Polycentropodidae) (Rhyacophilidae) and (Sericostomatidae). The high levels of intraspecific genetic variability found, combined with a lack of a barcode gap and a challenging morphological identification, rendered these species as needing additional studies to resolve their taxonomy.

摘要

背景

毛翅目昆虫是淡水生态系统的重要组成部分。在伊比利亚半岛,已知有380种毛翅目昆虫分类单元,其中近三分之一的物种为该地区特有。构建了一个形态学鉴定的毛翅目昆虫标本参考馆藏,代表142个伊比利亚分类单元。InBIO条形码计划(IBI)毛翅目01数据集包含438个测序标本的记录。该数据集的物种约占伊比利亚毛翅目物种多样性的37%。标本采集于1975年至2018年之间,存放在葡萄牙生物多样性和遗传资源研究中心CIBIO的IBI馆藏中,或西班牙圣地亚哥德孔波斯特拉大学的马科斯·A·冈萨雷斯馆藏中。

新信息

来自九个不同科的29个物种被新增到生命条形码数据系统(BOLD)中。在比较所分析物种的形态学鉴定和DNA条形码时,成功鉴定率超过80%。鉴于在此类研究中毛翅目幼虫和成虫形态学鉴定的不足,这一令人鼓舞的进展推动了在生物监测方案中纳入明智的环境DNA工具。DNA条形码在鉴定六个毛翅目属的物种时未成功:(纹石蛾科)、(长角石蛾科)、(沼石蛾科)、(多距石蛾科)、(石蛾科)和(丝角石蛾科)。所发现的种内高遗传变异性,加上缺乏条形码间隙以及具有挑战性的形态学鉴定,使得这些物种需要进一步研究以解决其分类问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8831/10848855/267b10454bd5/bdj-11-e97484-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验