Jijila B, Nirmala V, Selvarengan P, Kavitha D, Arun Muthuraj V, Rajagopal A
Queen Mary's College, Chennai, India.
Kalasalingam Academy of Research & Education, Krishnankoil, India.
J Mol Model. 2024 Feb 10;30(3):65. doi: 10.1007/s00894-024-05834-2.
With the union of machine learning (ML) and quantum chemistry, amid the debate between machine-learned functionals and human-designed functionals in density functional theory (DFT), this paper aims to demonstrate the generation of potential energy surfaces using computations with machine-learned density functional approximation (ML-DFA). A recent research trend is the application of ML in quantum sciences in the design of density functionals such as DeepMind's Deep Learning model (DeepMind21, DM21). Though science reported the state-of-the-art performance of DM21, the opportunity to utilize DeepMind's pretrained DM21 neural networks in computations in quantum chemistry has not yet been tapped. So far in the literature, the Deep Learning density functionals (DM21) have not been applied to generate potential energy surfaces. While the superior accuracy of DM21 has been reported, there is still a scarcity of publications that apply DM21 in calculations in the field. In this context, for the first time in literature, neural density functionals inferring 2D potential energy surfaces (ML-DFA-PES) based on machine-learned DFA-based computational method is contributed in this paper. This paper reports the ML-DFA-generated PES for CH, HO, H, and H by employing a pretrained DM21m TensorFlow model with cc-pVDZ basis set. In addition, we also analyze the long-range behavior of DM21 based PES to investigate the ability to describe a system at long ranges. Furthermore, we compare PES diagrams from DM21 with popular DFT functionals (b3lyp/ PW6B95) and CCSD(T).
In this method, 2D potential energy surfaces are obtained using a method that relies upon the neural network's ability to accurately learn the mapping between 3D electron density and exchange-correlation potential. By inserting Deep Learning inference in DFT with a pretrained neural network, self-consistent field (SCF) energy at different geometries along the coordinates of interest is computed, and then, potential energy surfaces are plotted. In this method, first, the electron density is computed mathematically, and this computed 3D electron density is used as a ML feature vector to predict the exchange correlation potential as a ML inference computed by a forward pass of pre-trained DM21 TensorFlow computational graph, followed by the computation of self-consistent field energy at multiple geometries, and then, SCF energies at different bond lengths/angles are plotted as 2D PES. We implement this in a python source code using frameworks such as PySCF and DM21. This paper contributes this implementation in open source. The source code and DM21-DFA-based PES are contributed at https://sites.google.com/view/MLfunctionals-DeepMind-PES .
随着机器学习(ML)与量子化学的结合,在密度泛函理论(DFT)中机器学习泛函与人工设计泛函的争论中,本文旨在展示使用机器学习密度泛函近似(ML-DFA)计算生成势能面。最近的一个研究趋势是ML在量子科学中应用于密度泛函的设计,如DeepMind的深度学习模型(DeepMind21,DM21)。尽管科学报道了DM21的最先进性能,但尚未挖掘出在量子化学计算中利用DeepMind预训练的DM21神经网络的机会。到目前为止,在文献中,深度学习密度泛函(DM21)尚未应用于生成势能面。虽然已经报道了DM21的卓越准确性,但在该领域的计算中应用DM21的出版物仍然很少。在此背景下,本文首次在文献中贡献了基于机器学习DFA的计算方法推断二维势能面(ML-DFA-PES)的神经密度泛函。本文通过使用具有cc-pVDZ基组的预训练DM21m TensorFlow模型报告了CH、HO、H和H的ML-DFA生成的PES。此外,我们还分析了基于DM21的PES的长程行为,以研究其在长程描述系统的能力。此外,我们将DM21的PES图与流行的DFT泛函(b3lyp/PW6B95)和CCSD(T)进行了比较。
在该方法中,使用一种依赖于神经网络准确学习三维电子密度与交换相关势之间映射能力的方法来获得二维势能面。通过在DFT中插入深度学习推理和预训练的神经网络,计算沿感兴趣坐标在不同几何结构下的自洽场(SCF)能量,然后绘制势能面。在该方法中,首先通过数学计算电子密度,将计算得到的三维电子密度用作ML特征向量,以预测作为由预训练的DM21 TensorFlow计算图的前向传播计算得到的ML推理的交换相关势,随后计算多个几何结构下的自洽场能量,然后将不同键长/角度下的SCF能量绘制为二维PES。我们使用PySCF和DM21等框架在Python源代码中实现了这一点。本文在开源中贡献了此实现。源代码和基于DM21-DFA的PES可在https://sites.google.com/view/MLfunctionals-DeepMind-PES获取。