Department of Microbiology, University of Tennessee Knoxville, Knoxville, Tennessee, USA.
School of Medicine, University of Tasmania, Hobart, Tasmania, Australia.
J Bacteriol. 2024 Jun 20;206(6):e0044423. doi: 10.1128/jb.00444-23. Epub 2024 Mar 20.
Cellular life relies on enzymes that require metals, which must be acquired from extracellular sources. Bacteria utilize surface and secreted proteins to acquire such valuable nutrients from their environment. These include the cargo proteins of the type eleven secretion system (T11SS), which have been connected to host specificity, metal homeostasis, and nutritional immunity evasion. This Sec-dependent, Gram-negative secretion system is encoded by organisms throughout the phylum Proteobacteria, including human pathogens and . Experimentally verified T11SS-dependent cargo include ransferrin-inding rotein B (TbpB), the hemophilin homologs eme eceptor rotein C (HrpC), emoilin (HphA), the immune evasion protein actor-inding rotein (fHbp), and the host symbiosis factor ematode ntestinal ocalization protein C (NilC). Here, we examined the specificity of T11SS systems for their cognate cargo proteins using taxonomically distributed homolog pairs of T11SS and hemophilin cargo and explored the ligand binding ability of those hemophilin cargo homologs. expression in of hemophilin homologs revealed that each is secreted in a specific manner by its cognate T11SS protein. Sequence analysis and structural modeling suggest that all hemophilin homologs share an N-terminal ligand-binding domain with the same topology as the ligand-binding domains of the heme binding protein (Hpl) and HphA. We term this signature feature of this group of proteins the hemophilin ligand-binding domain. Network analysis of hemophilin homologs revealed five subclusters and representatives from four of these showed variable heme-binding activities, which, combined with sequence-structure variation, suggests that hemophilins are diversifying in function.IMPORTANCEThe secreted protein hemophilin and its homologs contribute to the survival of several bacterial symbionts within their respective host environments. Here, we compared taxonomically diverse hemophilin homologs and their paired Type 11 secretion systems (T11SS) to determine if heme binding and T11SS secretion are conserved characteristics of this family. We establish the existence of divergent hemophilin sub-families and describe structural features that contribute to distinct ligand-binding behaviors. Furthermore, we demonstrate that T11SS are specific for their cognate hemophilin family cargo proteins. Our work establishes that hemophilin homolog-T11SS pairs are diverging from each other, potentially evolving into novel ligand acquisition systems that provide competitive benefits in host niches.
细胞的生命依赖于需要金属的酶,这些金属必须从细胞外来源获得。细菌利用表面和分泌的蛋白质从其环境中获取这些有价值的营养物质。其中包括十一型分泌系统(T11SS)的货物蛋白,这些蛋白与宿主特异性、金属内稳态和营养免疫逃避有关。这种依赖 Sec 的革兰氏阴性分泌系统由整个 Proteobacteria 门的生物体编码,包括人类病原体和。经过实验验证的 T11SS 依赖性货物蛋白包括转铁蛋白结合蛋白 B(TbpB)、血红素结合蛋白同源物 eme 受体蛋白 C(HrpC)、hemolysin (HphA)、免疫逃避蛋白 actor-inding 蛋白(fHbp)和宿主共生因子 ematode 肠道定位蛋白 C(NilC)。在这里,我们使用 T11SS 和血红素结合蛋白货物的分类分布同源对研究了 T11SS 系统对其同源货物蛋白的特异性,并探索了这些血红素结合蛋白货物同源物的配体结合能力。在 中表达血红素结合蛋白同源物表明,每种同源物都由其同源 T11SS 蛋白以特定方式分泌。序列分析和结构建模表明,所有血红素结合蛋白同源物都具有相同拓扑结构的 N 端配体结合结构域,与血红素结合蛋白(Hpl)和 HphA 的配体结合结构域相同。我们将这个基团的这种特征称为血红素结合蛋白的配体结合结构域。血红素结合蛋白同源物的网络分析显示了五个亚群,其中四个亚群的代表具有可变的血红素结合活性,这与序列结构的变化相结合,表明血红素结合蛋白正在功能上多样化。
分泌蛋白血红素结合蛋白及其同源物有助于几种细菌共生体在各自的宿主环境中存活。在这里,我们比较了分类上多样化的血红素结合蛋白同源物及其配对的十一型分泌系统(T11SS),以确定血红素结合和 T11SS 分泌是否是这个家族的保守特征。我们建立了不同的血红素结合蛋白亚家族的存在,并描述了有助于独特配体结合行为的结构特征。此外,我们证明了 T11SS 是其同源血红素家族货物蛋白的特异性。我们的工作表明,血红素结合蛋白同源物-T11SS 对正在彼此分化,可能进化成新的配体获取系统,为宿主小生境提供竞争优势。