Shboul Mohammad, Bani Domi Amal, Abu Zahra Abdulmalek, Khasawneh Aws G, Darweesh Reem
Department of Medical Laboratory Sciences, Faculty of Medical Sciences, Jordan University of Science and Technology, P.O. Box 3030, Irbid, 22110, Jordan.
Department of Neurosciences, Faculty of Medicine, Jordan University of Science and Technology, P.O. Box 3030, Irbid, 22110, Jordan.
Noncoding RNA Res. 2024 Jan 30;9(2):350-358. doi: 10.1016/j.ncrna.2024.01.018. eCollection 2024 Jun.
Schizophrenia (SZ), a complex and chronic neuropsychiatric disorder affecting approximately 1 % of the general population, presents diagnostic challenges due to the absence of reliable biomarkers, and relying mainly on clinical observations. MicroRNAs (miRNAs) signatures in a wide range of diseases, including psychiatric disorders, hold immense potential for serving as biomarkers. This study aimed to analyze the expression levels of specific microRNAs (miRNAs) namely miR-29b-3p, miR-106b-5p, and miR-199a-3p and explore their diagnostic potential for SZ in Jordanian patients.
Small RNAs (miRNAs) were extracted from plasma samples of 30 SZ patients and 35 healthy controls. RNA was reverse transcribed and quantified by real-time polymerase chain reaction (qRT-PCR). The expression levels of three miRNAs (miR-29b-3p, miR-106b-5p and miR-199a-3p) were analyzed. Receiver operating characteristic (ROC) curves analysis was performed to evaluate diagnostic value of these miRNAs. Target genes prediction, functional enrichment and pathway analyses were done using miRWalk and Metascape. STRING database was used to construct protein-protein network and identify hub genes.
Notably, miR-106b-5p and miR-199a-3p were significantly upregulated (p < 0.0001), while miRNA-29b-3p was downregulated (p < 0.0001) in SZ patients compared to controls. The diagnostic potential was assessed through ROC curves, revealing substantial diagnostic value for miR-199a-3p (AUC: 0.979) followed by miR-106b-5p (AUC: 0.774), with limited diagnostic efficacy for miR-29b-3p. Additionally, bioinformatic analyses for the predicted target genes of the diagnostically significant miRNAs uncovered Gene Ontology (GO) terms related to neurological development, including morphogenesis, which is involved in neuron differentiation, brain development, head development, and neuron projection morphogenesis. These findings highlight a potential connection between the identified miRNAs and SZ pathophysiology in the studied Jordanian population. Furthermore, a protein-protein interaction network from the target genes identified in association with neurological development in the Gene Ontology (GO) terms deepens our comprehension of the molecular landscape of the regulated target genes.
This comprehensive exploration highlights the promising role of miRNAs in unraveling intricate molecular pathways associated with SZ in the Jordanian cohort and suggests that plasma miRNAs could serve as reliable biomarkers for SZ diagnosis and disease progression. Remarkably, this study represents the first investigation into the role of circulating miRNA expression among Jordanian patients with SZ, providing valuable insights into the diagnostic landscape of this disorder.
精神分裂症(SZ)是一种复杂的慢性神经精神疾病,影响着约1%的普通人群。由于缺乏可靠的生物标志物,目前主要依靠临床观察进行诊断,这带来了诊断挑战。微小RNA(miRNA)在包括精神疾病在内的多种疾病中的特征,具有作为生物标志物的巨大潜力。本研究旨在分析特定微小RNA(miRNA)即miR - 29b - 3p、miR - 106b - 5p和miR - 199a - 3p的表达水平,并探讨它们在约旦患者中对SZ的诊断潜力。
从30例SZ患者和35例健康对照者的血浆样本中提取小RNA(miRNA)。RNA经逆转录后通过实时聚合酶链反应(qRT - PCR)进行定量。分析了三种miRNA(miR - 29b - 3p、miR - 106b - 5p和miR - 199a - 3p)的表达水平。进行了受试者工作特征(ROC)曲线分析以评估这些miRNA的诊断价值。使用miRWalk和Metascape进行靶基因预测、功能富集和通路分析。利用STRING数据库构建蛋白质 - 蛋白质网络并鉴定枢纽基因。
值得注意的是,与对照组相比,SZ患者中miR - 106b - 5p和miR - 199a - 3p显著上调(p < 0.0001),而miRNA - 29b - 3p下调(p < 0.0001)。通过ROC曲线评估诊断潜力,结果显示miR - 199a - 3p具有显著的诊断价值(AUC:0.979),其次是miR - 106b - 5p(AUC:0.774),而miR - 29b - 3p的诊断效能有限。此外,对具有诊断意义的miRNA的预测靶基因进行的生物信息学分析发现了与神经发育相关的基因本体(GO)术语,包括形态发生,其参与神经元分化、脑发育、头部发育和神经元投射形态发生。这些发现突出了在所研究的约旦人群中鉴定出的miRNA与SZ病理生理学之间的潜在联系。此外,从与基因本体(GO)术语中神经发育相关的靶基因鉴定出的蛋白质 - 蛋白质相互作用网络加深了我们对受调控靶基因分子格局的理解。
这一全面探索突出了miRNA在揭示约旦队列中与SZ相关的复杂分子途径方面的潜在作用,并表明血浆miRNA可作为SZ诊断和疾病进展的可靠生物标志物。值得注意的是,本研究是对约旦SZ患者中循环miRNA表达作用的首次调查,为该疾病的诊断前景提供了有价值的见解。