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海生放线菌 Sciscionella sediminilitoris sp. nov.,分离自马来西亚 Cape Rochado,以及对 Sciscionella 属描述的修正。

Sciscionella sediminilitoris sp. nov., a Marine Actinomycete Isolated from Cape Rochado, Malaysia, and the Emendations to the Description of the Genus Sciscionella.

机构信息

Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.

Centre for Research in Biotechnology for Agriculture (CEBAR), Level 3, Research Management and Innovation Complex, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.

出版信息

Curr Microbiol. 2024 Mar 29;81(5):124. doi: 10.1007/s00284-024-03634-8.

Abstract

In this study, we employed a polyphasic approach to determine the taxonomic position of a newly isolated actinomycete, designated SE31, obtained from a sediment sample collected at Cape Rochado, Malaysia. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain SE31 belonged to the family Pseudonocardiaceae and exhibited the highest sequence similarity (98.9%) to Sciscionella marina. Further genomic analysis demonstrated a 93.4% average nucleotide identity and 54.4% digital DNA-DNA hybridization relatedness between strain SE31 and S. marina. The chemotaxonomic characteristics of strain SE31 were typical of the genus Sciscionella, including cell-wall chemotype IV (with meso-diaminopimelic acid as the diagnostic diamino acid, and arabinose and galactose as whole-cell sugars). The identified polar lipids of strain SE31 were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylmethylethanolamine, and hydroxyphosphatidymethylethanolamine. The primary menaquinone observed was MK-9(H), and the major cellular fatty acid was iso-C. The genomic DNA size of strain SE31 was determined to be 7.4 Mbp with a G+C content of 68.7%. Based on these comprehensive findings, strain SE31 represents a novel species within the genus Sciscionella, in which the name Sciscionella sediminilitoris sp. nov. is proposed. The type strain of Sciscionella sediminilitoris is SE31 (= DSM 46824 = TBRC 5134).

摘要

在本研究中,我们采用多相分类方法来确定从马来西亚罗查多角采集的沉积物样本中分离得到的新放线菌菌株 SE31 的分类地位。16S rRNA 基因序列的系统发育分析表明,菌株 SE31 属于假诺卡氏科,与海洋拟诺卡氏菌(Sciscionella marina)的序列相似性最高(98.9%)。进一步的基因组分析表明,菌株 SE31 与 S. marina 之间的平均核苷酸同一性为 93.4%,数字 DNA-DNA 杂交相关性为 54.4%。菌株 SE31 的化学生态特征典型属于海洋拟诺卡氏菌属,包括细胞壁化学型 IV(以 meso-二氨基庚二酸为特征性二氨基庚二酸,以及阿拉伯糖和半乳糖作为全细胞糖)。菌株 SE31 的鉴定极性脂为双磷脂酰甘油、磷脂酰甘油、磷脂酰甲乙醇胺和羟磷酰甲乙醇胺。观察到的主要menaquinone 是 MK-9(H),主要细胞脂肪酸是异-C。菌株 SE31 的基因组 DNA 大小为 7.4 Mbp,G+C 含量为 68.7%。基于这些综合发现,菌株 SE31 代表海洋拟诺卡氏菌属中的一个新种,命名为 Sediminilitoris 拟诺卡氏菌(Sciscionella sediminilitoris)sp. nov.。Sediminilitoris 拟诺卡氏菌的模式菌株为 SE31(=DSM 46824=TBRC 5134)。

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