Department of Biochemistry, Molecular Biology and Biophysics and Biotechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
Microb Biotechnol. 2024 Apr;17(4):e14463. doi: 10.1111/1751-7915.14463.
The fate of organic matter in the environment, including anthropogenic chemicals, is largely predicated on the enzymatic capabilities of microorganisms. Microbes readily degrade, and thus recycle, most of the ~100,000 commercial chemicals used in modern society. Per- and polyfluorinated compounds (PFAS) are different. Many research papers posit that the general resistance of PFAS to microbial degradation is based in chemistry and that argument relates to the strength of the C-F bond. Here, I advance the opinion that the low biodegradability of PFAS is best formulated as a biological optimization problem, hence evolution. The framing of the problem is important. If it is framed around C-F bond strength, the major effort should focus on finding and engineering new C-F cleaving enzymes. The alternative, and preferred approach suggested here, is to focus on the directed evolution of biological systems containing known C-F cleaving systems. There are now reports of bacteria degrading and/or growing on multiply fluorinated arenes, alkenoic and alkanoic acids. The impediment to more efficient and widespread biodegradation in these systems is biological, not chemical. The rationale for this argument is made in the five sections below that follow the Introduction.
在环境中,包括人为化学物质在内的有机物的命运在很大程度上取决于微生物的酶能力。微生物很容易降解,从而回收利用现代社会中使用的约 10 万种商用化学品中的大部分。全氟和多氟化合物(PFAS)则不同。许多研究论文认为,PFAS 普遍抗微生物降解的原因基于化学性质,这与 C-F 键的强度有关。在这里,我提出这样一种观点,即 PFAS 的低生物降解性最好被表述为一个生物优化问题,因此与进化有关。问题的框架很重要。如果将其围绕 C-F 键强度来构建,那么主要的工作重点应该放在寻找和设计新的 C-F 裂解酶上。另一种选择,也是这里建议的首选方法,是专注于包含已知 C-F 裂解系统的生物系统的定向进化。现在有报道称细菌可以降解和/或在多氟化芳烃、烯酸和烷酸上生长。在这些系统中,更有效和更广泛的生物降解的障碍是生物的,而不是化学的。以下是引言之后的五个部分,其中包含了这一论点的基本原理。