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多种人类癌细胞系在凋亡条件下mA RNA甲基化调节因子的表达模式。

Expression patterns of mA RNA methylation regulators under apoptotic conditions in various human cancer cell lines.

作者信息

Alasar Azime Akçaöz, Sağlam Buket, Vatansever İpek Erdoğan, Akgül Bünyamin

机构信息

Department of Molecular Biology and Genetics, Noncoding RNA Laboratory, İzmir Institute of Technology, İzmir, Turkiye.

出版信息

Turk J Biol. 2023 Dec 14;48(1):24-34. doi: 10.55730/1300-0152.2679. eCollection 2024.

Abstract

BACKGROUND/AIM: Cancer is a complex disease that involves both genetic and epigenetic factors. While emerging evidence clearly suggests that changes in epitranscriptomics play a crucial role in cancer pathogenesis, a comprehensive understanding of the writers, erasers, and readers of epitranscriptomic processes, particularly under apoptotic conditions remains lacking. The aim of this study was to uncover the changes in the expression of mA RNA modifiers under apoptotic conditions across various cancer cell lines.

MATERIALS AND METHODS

Initially, we quantified the abundance of mA RNA modifiers in cervical (HeLa and ME180), breast (MCF7 and MDA-MB-231), lung (A549 and H1299), and colon (Caco-2 and HCT116) cancer cell lines using qPCR. Subsequently, we induced apoptosis using cisplatin and tumor necrosis factor-alpha (TNF-α) to activate intrinsic and extrinsic pathways, respectively, and assessed apoptosis rates via flow cytometry. Further, we examined the transcript abundance of mA RNA modifiers under apoptotic conditions in cervical, breast, and lung cancer cell lines using qPCR.

RESULTS

Overall, treatment with cisplatin increased the abundance of mA modifiers, whereas TNF-α treatment decreased their expression in cervical, breast, and lung cancer cell lines. Specifically, cisplatin-induced apoptosis, but not TNF-α-mediated apoptosis, resulted in decreased abundance of METTL14 and FTO transcripts. Additionally, cisplatin treatment drastically reduced the abundance of IGF2BP2 and IGF2BP3 readers.

CONCLUSION

These results suggest that the differential response of cancer cells to apoptotic inducers may be partially attributed to the expression of mA RNA modifiers.

摘要

背景/目的:癌症是一种复杂的疾病,涉及遗传和表观遗传因素。虽然新出现的证据清楚地表明,表观转录组学的变化在癌症发病机制中起着关键作用,但对于表观转录组过程的写入器、擦除器和读取器,尤其是在凋亡条件下,仍缺乏全面的了解。本研究的目的是揭示在凋亡条件下,各种癌细胞系中m⁶A RNA修饰因子表达的变化。

材料与方法

最初,我们使用qPCR定量检测了宫颈癌细胞系(HeLa和ME180)、乳腺癌细胞系(MCF7和MDA-MB-231)、肺癌细胞系(A549和H1299)以及结肠癌细胞系(Caco-2和HCT116)中m⁶A RNA修饰因子的丰度。随后,我们分别使用顺铂和肿瘤坏死因子-α(TNF-α)诱导凋亡,以激活内源性和外源性途径,并通过流式细胞术评估凋亡率。此外,我们使用qPCR检测了宫颈、乳腺和肺癌细胞系在凋亡条件下m⁶A RNA修饰因子的转录本丰度。

结果

总体而言,顺铂处理增加了m⁶A修饰因子的丰度,而TNF-α处理则降低了宫颈、乳腺和肺癌细胞系中它们的表达。具体而言,顺铂诱导的凋亡而非TNF-α介导的凋亡导致METTL14和FTO转录本丰度降低。此外,顺铂处理显著降低了IGF2BP2和IGF2BP3读取器的丰度。

结论

这些结果表明,癌细胞对凋亡诱导剂的不同反应可能部分归因于m⁶A RNA修饰因子的表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff18/11042863/cef0880a128b/tjb-48-01-024f1.jpg

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