Ren Lei, Liu Jinwen, Lin Qingyuan, He Tianyi, Huang Guankai, Wang Weifeng, Zhan Xunhao, He Yu, Huang Bin, Mao Xiaopeng
Department of Urology, The First Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen University, Guangzhou, China.
Department of Urology, The Seventh Affiliated Hospital of Sun Yat-sen University, Sun Yat-sen University, Shenzhen, China.
BMC Genomics. 2024 Apr 26;25(1):413. doi: 10.1186/s12864-024-10307-0.
Disulfidptosis is a novel form of programmed cell death induced by high SLC7A11 expression under glucose starvation conditions, unlike other known forms of cell death. However, the roles of disulfidptosis in cancers have yet to be comprehensively well-studied, particularly in ccRCC.
The expression profiles and somatic mutation of DGs from the TCGA database were investigated. Two DGs clusters were identified by unsupervised consensus clustering analysis, and a disulfidptosis-related prognostic signature (DR score) was constructed. Furthermore, the predictive capacity of the DR score in prognosis was validated by several clinical cohorts. We also developed a nomogram based on the DR score and clinical features. Then, we investigated the differences in the clinicopathological information, TMB, tumor immune landscapes, and biological characteristics between the high- and low-risk groups. We evaluated whether the DR score is a robust tool for predicting immunotherapy response by the TIDE algorithm, immune checkpoint genes, submap analysis, and CheckMate immunotherapy cohort.
We identified two DGs clusters with significant differences in prognosis, tumor immune landscapes, and clinical features. The DR score has been demonstrated as an independent risk factor by several clinical cohorts. The high-risk group patients had a more complicated tumor immune microenvironment and suffered from more tumor immune evasion in immunotherapy. Moreover, patients in the low-risk group had better prognosis and response to immunotherapy, particularly in anti-PD1 and anti-CTLA-4 inhibitors, which were verified in the CheckMate immunotherapy cohort.
The DR score can accurately predict the prognosis and immunotherapy response and assist clinicians in providing a personalized treatment regime for ccRCC patients.
二硫化物诱导的细胞焦亡是一种在葡萄糖饥饿条件下由高SLC7A11表达诱导的新型程序性细胞死亡形式,与其他已知的细胞死亡形式不同。然而,二硫化物诱导的细胞焦亡在癌症中的作用尚未得到全面深入的研究,尤其是在肾透明细胞癌(ccRCC)中。
研究了来自TCGA数据库的二硫化物诱导的细胞焦亡相关基因(DGs)的表达谱和体细胞突变。通过无监督一致性聚类分析鉴定出两个DGs簇,并构建了一个与二硫化物诱导的细胞焦亡相关的预后特征(DR评分)。此外,通过几个临床队列验证了DR评分在预后预测中的能力。我们还基于DR评分和临床特征开发了一种列线图。然后,我们研究了高风险组和低风险组在临床病理信息、肿瘤突变负荷(TMB)、肿瘤免疫景观和生物学特征方面的差异。我们通过TIDE算法、免疫检查点基因、亚图分析和CheckMate免疫治疗队列评估DR评分是否是预测免疫治疗反应的可靠工具。
我们鉴定出两个在预后、肿瘤免疫景观和临床特征上有显著差异的DGs簇。几个临床队列已证明DR评分是一个独立的危险因素。高风险组患者的肿瘤免疫微环境更复杂,在免疫治疗中遭受更多的肿瘤免疫逃逸。此外,低风险组患者的预后和对免疫治疗的反应更好,特别是在抗PD1和抗CTLA-4抑制剂治疗中,这在CheckMate免疫治疗队列中得到了验证。
DR评分可以准确预测预后和免疫治疗反应,并协助临床医生为ccRCC患者提供个性化的治疗方案。