Lautert-Dutra William, Melo Camila Morais, Chaves Luiz Paulo, Sousa Francisco Cesar, Crozier Cheryl, Dion Dan, Avante Filipe S, Saggioro Fabiano Pinto, Dos Reis Rodolfo Borges, Archangelo Leticia Fröhlich, Bayani Jane, Squire Jeremy A
Department of Genetics, Faculty of Medicine at Ribeirão Preto, University of São Paulo (FMRP-USP), Ribeirão Preto 14049-900, SP, Brazil.
Division of Urology, Department of Surgery and Anatomy, University of São Paulo (FMRP-USP), Ribeirão Preto 14049-900, SP, Brazil.
Cancers (Basel). 2024 Apr 12;16(8):1480. doi: 10.3390/cancers16081480.
Prostate cancer (PCa) is an immunologically cold tumor and the molecular processes that underlie this behavior are poorly understood. In this study, we investigated a primary cohort of intermediate-risk PCa ( = 51) using two NanoString profiling panels designed to study cancer progression and immune response. We identified differentially expressed genes (DEGs) and pathways associated with biochemical recurrence (BCR) and clinical risk. Confirmatory analysis was performed using the TCGA-PRAD cohort. Noteworthy DEGs included collagens such as , , and . Changes in the distribution of collagens may influence the immune activity in the tumor microenvironment (TME). In addition, immune-related DEGs such as , , and were also identified. Enrichment analysis highlighted pathways such as those associated with angiogenesis, TGF-beta, UV response, and EMT. Among the 39 significant DEGs, 11 (28%) were identified as EMT target genes for using the Harmonizome database. Elevated expression correlated with reduced BCR risk. Immune landscape analysis revealed that was associated with increased immunosuppressive cell types in the TME, such as naïve B cells and M2 macrophages. Increased expression of both and was associated with elevated immune checkpoint expression. In the future, modulation of EMT could be beneficial for overcoming immunotherapy resistance in a cold tumor, such as PCa.
前列腺癌(PCa)是一种免疫冷肿瘤,其这种行为背后的分子过程尚不清楚。在本研究中,我们使用两个旨在研究癌症进展和免疫反应的NanoString分析面板,对51例中级风险PCa的原始队列进行了研究。我们确定了与生化复发(BCR)和临床风险相关的差异表达基因(DEG)和通路。使用TCGA-PRAD队列进行了验证性分析。值得注意的DEG包括胶原蛋白,如、和。胶原蛋白分布的变化可能会影响肿瘤微环境(TME)中的免疫活性。此外,还鉴定出了免疫相关的DEG,如、和。富集分析突出了与血管生成、TGF-β、紫外线反应和上皮-间质转化(EMT)相关的通路。在39个显著的DEG中,使用Harmonizome数据库鉴定出11个(28%)为EMT靶基因。的表达升高与BCR风险降低相关。免疫景观分析显示,与TME中免疫抑制细胞类型的增加有关,如幼稚B细胞和M2巨噬细胞。和表达的增加均与免疫检查点表达升高有关。未来,调节EMT可能有助于克服冷肿瘤(如PCa)中的免疫治疗耐药性。