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基于网络药理学及miRNA-mRNA调控网络探讨益胃汤干预卵巢早衰大鼠的作用机制

Exploring the Mechanism of Yiwei Decoction in the Intervention of a Premature Ovarian Insufficiency Rat Based on Network Pharmacology and the miRNA-mRNA Regulatory Network.

作者信息

Fan Weisen, Lei Hong, Li Xuan, Zhao Yinghui, Zhang Yingjie, Li Yalin

机构信息

The First Clinical College of Medicine, Shandong University of Traditional Chinese Medicine, Jinan 250013, China.

College of Traditional Chinese Medicine, Shandong University of Traditional Chinese Medicine, Jinan 250013, China.

出版信息

ACS Omega. 2024 Apr 17;9(17):19009-19019. doi: 10.1021/acsomega.3c09551. eCollection 2024 Apr 30.

Abstract

OBJECTIVE

our aim is to explore the mechanism of action of Yiwei decoction (YWD) in addressing premature ovarian insufficiency (POI) through a combination of transcriptomics and network pharmacology. By doing so, we hope to identify important pathways of action, key targets, and active components that contribute to the efficacy of YWD.

MATERIALS AND METHODS

group A comprised of the model + traditional Chinese medicine group, while group B was the model control group and group C was the normal control group. After gavage, serum AMH and E2 levels were measured by using ELISA. HE staining was used to study the impact of YWD on ovarian follicle recovery in POI rats. Additionally, RNA-seq sequencing technology was employed to analyze the transcription levels of mRNAs and miRNAs in the ovarian tissues of each group, and the resulting data were examined using R. YWD used UPLC-Q-TOF-HRMS to analyze its active ingredients. Upon obtaining the sequencing results, the miRWalk database was utilized to forecast the targets of DEmiRNAs. Network pharmacology was then applied to predict the targets of active ingredients present in YWD, ultimately constructing a regulatory network consisting of active ingredients-mRNA-miRNA. The coexpression relationship between mRNAs and miRNAs was calculated using the Pearson correlation coefficient, and high correlation coefficients between miRNA-mRNA were confirmed through miRanda sequence combination.

RESULTS

the application of YWD resulted in improved serum levels of AMH and E2, as well as an increased number of ovarian follicles in rats with POI. However, there was a minimal impact on the infiltration of ovarian lymphocytes. Through GSEA pathway enrichment analysis, we found that YWD may have a regulatory effect on PI3K-Akt, ovarian steroidogenesis, and protein digestion and absorption, which could aid in the treatment of POI. Additionally, our research discovered a total of 6 DEmiRNAs between groups A and B, including 2 new DEmiRNAs. YWD contains 111 active compounds, and our analysis of the active component-mRNA regulatory network revealed 27 active components and 73 mRNAs. Furthermore, the coexpression network included 5 miRNAs and 18 mRNAs. Our verification of MiRanda binding demonstrated that 12 of the sequence binding sites were stable.

CONCLUSIONS

our research has uncovered the regulatory network mechanism of active ingredients, mRNA, and miRNA in YWD POI treatment. However, further research is needed to determine the effect of the active ingredients on key miRNAs and mRNAs.

摘要

目的

我们的目的是通过转录组学和网络药理学相结合的方法,探索益胃汤(YWD)治疗卵巢早衰(POI)的作用机制。通过这样做,我们希望确定重要的作用途径、关键靶点和有助于YWD疗效的活性成分。

材料与方法

A组为模型+中药组,B组为模型对照组,C组为正常对照组。灌胃后,采用酶联免疫吸附测定法(ELISA)检测血清抗苗勒管激素(AMH)和雌二醇(E2)水平。苏木精-伊红(HE)染色用于研究YWD对POI大鼠卵巢卵泡恢复的影响。此外,采用RNA测序(RNA-seq)技术分析各组卵巢组织中mRNA和微小RNA(miRNA)的转录水平,并使用R软件对所得数据进行检验。YWD采用超高效液相色谱-四极杆-飞行时间-高分辨质谱(UPLC-Q-TOF-HRMS)分析其活性成分。获得测序结果后,利用miRWalk数据库预测差异表达miRNA(DEmiRNA)的靶点。然后应用网络药理学预测YWD中活性成分的靶点,最终构建活性成分-mRNA-miRNA调控网络。使用Pearson相关系数计算mRNA和miRNA之间的共表达关系,并通过miRanda序列组合确认miRNA-mRNA之间的高相关系数。

结果

YWD的应用导致POI大鼠血清AMH和E2水平升高,卵巢卵泡数量增加。然而,对卵巢淋巴细胞浸润的影响最小。通过基因集富集分析(GSEA)途径富集分析,我们发现YWD可能对磷脂酰肌醇-3激酶-蛋白激酶B(PI3K-Akt)、卵巢类固醇生成以及蛋白质消化和吸收具有调节作用,这可能有助于POI的治疗。此外,我们的研究发现A组和B组之间共有6个DEmiRNA,包括2个新的DEmiRNA。YWD含有111种活性化合物,我们对活性成分-mRNA调控网络的分析揭示了27种活性成分和73种mRNA。此外,共表达网络包括5个miRNA和18个mRNA。我们对MiRanda结合的验证表明,12个序列结合位点是稳定的。

结论

我们的研究揭示了YWD治疗POI过程中活性成分、mRNA和miRNA的调控网络机制。然而,需要进一步研究来确定活性成分对关键miRNA和mRNA的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aefd/11064180/f648227ae1d3/ao3c09551_0001.jpg

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