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基于生物信息学和实验验证的PCDHGA10作为肺鳞状细胞癌的潜在生物标志物

PCDHGA10 as a Potential Biomarker of Lung Squamous Cell Carcinoma Based on Bioinformatics and Experimental Verification.

作者信息

Song Shuming, Lu Ruijiao, Chen Yuanya, Feng Yangchun

机构信息

Xinjiang Key Laboratory of Oncology, Cancer Hospial Affiliated to Xinjiang Medical University, Urumqi, China.

People's Hospital of Bachu County, Xinjiang, Kashgar, China.

出版信息

Mol Biotechnol. 2025 May;67(5):2002-2022. doi: 10.1007/s12033-024-01178-7. Epub 2024 May 10.

Abstract

Procalcitonin gamma subfamily A, 10 (PCDHGA10) is a member of the procalcitonin gamma gene cluster, which is associated with neuronal synapse development. However, there are lack of studies on the role and potential prognostic value of PCDHGA10 in lung squamous cell carcinoma (LUSC). We analyzed the RNAseq data of PCDHGA10 to compare their expression differences. Then survival analysis, tumor microenvironment (TME) analysis, and mutation analysis were carried out. Additionally, we performed gene ontology (GO) and kyoto gene encyclopedia (KEGG) enrichment analyses to explore potential signal pathways. PCDHGA10 protein expression was evaluated using immunohistochemistry (IHC) on tissue microarrays (HLugS180Su02). By microarray analysis and database analysis, we found that PCDHGA10 was significantly highly expressed in LUSC. Sufferers with elevated PCDHGA10 levels exhibited a worse prognosis, according to the survival analysis. The PCDHGA10 mutation was also linked to LUSC patient prognosis. Besides, PCDHGA10 was closely related to tumor immune cell infiltration and immune checkpoints. In conclusion, PCDHGA10 is expected to become a new molecular marker for LUSC.

摘要

降钙素原γ亚家族A成员10(PCDHGA10)是降钙素原γ基因簇的成员,与神经元突触发育相关。然而,关于PCDHGA10在肺鳞状细胞癌(LUSC)中的作用和潜在预后价值的研究较少。我们分析了PCDHGA10的RNAseq数据以比较其表达差异。然后进行了生存分析、肿瘤微环境(TME)分析和突变分析。此外,我们进行了基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析以探索潜在的信号通路。使用免疫组织化学(IHC)在组织微阵列(HLugS180Su02)上评估PCDHGA10蛋白表达。通过微阵列分析和数据库分析,我们发现PCDHGA10在LUSC中显著高表达。根据生存分析,PCDHGA10水平升高的患者预后较差。PCDHGA10突变也与LUSC患者的预后相关。此外,PCDHGA10与肿瘤免疫细胞浸润和免疫检查点密切相关。总之,PCDHGA10有望成为LUSC的一种新的分子标志物。

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